Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G48790 416 / 3e-142 Domain of unknown function (DUF1995) (.1) AT1G32100 400 / 5e-136 ATPRR1 pinoresinol reductase 1 (.1) AT4G13660 391 / 1e-132 ATPRR2 pinoresinol reductase 2 (.1) AT1G75280 276 / 4e-88 NmrA-like negative transcriptional regulator family protein (.1) AT1G75290 271 / 9e-86 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT4G39230 248 / 3e-77 NmrA-like negative transcriptional regulator family protein (.1) AT1G75300 245 / 7e-76 NmrA-like negative transcriptional regulator family protein (.1) AT1G19540 242 / 6e-75 NmrA-like negative transcriptional regulator family protein (.1) AT4G34540 216 / 6e-65 NmrA-like negative transcriptional regulator family protein (.1) AT5G27560 52 / 9e-07 Domain of unknown function (DUF1995) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012147 [exp] 568 / 0 AT1G32100 383 / 1e-133 pinoresinol reductase 1 (.1) Lus10010403 [exp] 424 / 3e-145 AT1G32100 446 / 1e-158 pinoresinol reductase 1 (.1) Lus10012143 [exp] 424 / 3e-145 AT1G32100 447 / 1e-159 pinoresinol reductase 1 (.1) Lus10012145 [exp] 399 / 2e-135 AT1G32100 419 / 2e-148 pinoresinol reductase 1 (.1) Lus10040442 [exp] 280 / 2e-89 AT4G39230 462 / 2e-165 NmrA-like negative transcriptional regulator family protein (.1) Lus10023557 [exp] 276 / 5e-86 AT4G39230 461 / 2e-162 NmrA-like negative transcriptional regulator family protein (.1) Lus10042311 [exp] 271 / 9e-86 AT4G39230 489 / 4e-176 NmrA-like negative transcriptional regulator family protein (.1) Lus10026351 [exp] 266 / 7e-84 AT4G39230 481 / 4e-173 NmrA-like negative transcriptional regulator family protein (.1) Lus10026348 [exp] 263 / 6e-83 AT4G39230 442 / 2e-157 NmrA-like negative transcriptional regulator family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G133200 [exp] 547 / 0 AT1G32100 410 / 6e-145 pinoresinol reductase 1 (.1) Potri.003G100300 [exp] 452 / 2e-156 AT5G48790 431 / 4e-153 Domain of unknown function (DUF1995) (.1) Potri.001G133300 [exp] 442 / 2e-152 AT1G32100 462 / 2e-165 pinoresinol reductase 1 (.1) Potri.003G100200 [exp] 436 / 3e-150 AT1G32100 462 / 2e-165 pinoresinol reductase 1 (.1) Potri.002G034400 [exp] 278 / 1e-88 AT1G75280 467 / 2e-167 NmrA-like negative transcriptional regulator family protein (.1) Potri.005G228700 [exp] 277 / 2e-88 AT1G75280 451 / 3e-161 NmrA-like negative transcriptional regulator family protein (.1) Potri.009G118100 [exp] 273 / 8e-87 AT4G39230 501 / 0.0 NmrA-like negative transcriptional regulator family protein (.1) Potri.009G118300 [exp] 251 / 3e-78 AT4G39230 488 / 8e-176 NmrA-like negative transcriptional regulator family protein (.1) Potri.011G168400 [exp] 251 / 6e-78 AT4G39230 448 / 2e-159 NmrA-like negative transcriptional regulator family protein (.1) Potri.009G118000 [exp] 244 / 6e-76 AT4G34540 432 / 7e-154 NmrA-like negative transcriptional regulator family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF05368 [flax] [poplar] NmrA NmrA-like family CL0063 [flax] [poplar] PF09353 [flax] [poplar] DUF1995 Domain of unknown function (DUF1995)
Representative CDS sequence Show only first row Show all	>Lus10007599 pacid=23148077 polypeptide=Lus10007599 locus=Lus10007599.g ID=Lus10007599.BGIv1.0 annot-version=v1.0 ATGGGATCCCTCCCGGCCATCGCCACCGTCGGCCACAAGAGCAAGGTCCTGGTGATCGGAGGCACAGGTTACTTAGGCAAGAGGCTAGTGACGGCCAGCT TAGCCGCCGGTCACGAAACCTACGTCCTCCAACGTCCGGAGATCGGCGTCGACATCGAGAAGATCCAGCTCCTGCTTTCGTTTAAAAAGGCCGGTGCAAG CCTCGTCAGCGGCTCGTTCAACGACTACCGCAGCCTCGTCGATGCCGTCAAGCTCGTCGACGTCGTGATCTGCGCCGTCTCCGGCGTCCACATCCGTAGC CACCAGATCTTGCTCCAGCTCAAGCTCGTTGATGCCATCAAAGAAGCCGGTAACGTTAAGAGGTTCTTGCCTTCGGAGTTTGGAACGGATCCGGCAACGA TGGAGAACGCGATGGAACCGGGGAGAGTGACGTTCGACGACAAGATGGTGGTGAGGAAGGCGATAGAGGAAGCTGGGATTCCGTTCACATACATTTCCGC CAATTGCTTCGCCGGTTACTTCCTCGGCGGCCTTTGCCAGCCTGGCTTTATTCTTCCTTCACGTGAACAAGTGACTTTGCTCGGAGACGGTAACCAGAAA GCTGTTTATGTTGACGAGGACGATATTGCGCGATACACGATCAAAATGATAGACGATCCTCGTACTCTGAACAAGACGGTCTACATCAAGCCGCCGAAAA ATGTATTGTCCCAACGGGAAGTCGTCGGAATTTGGGAGAAATACATCGGTAAAGAGCTAAAAAAGACAACCCTGTCCGTGGAAGAGTTCCTCGCGATGAT GAAAGAACAAGATTATGCAGAGCAAGTCGGATTGACGCACTACTACCATGTGTGCTACGAAGGGTGCCTTACGAACTTCGAGATCGGAGATGAAGCCGGT GAGGCTACTAAGCTGTACCCGGAAGTTGGGTACACGACTGTTGAGAAAATGCAGTTTTCTTCTTATTCACAATCTCATCACTTCCTTCCTCCTCTTGCCA TTTCCCCATTGCCGAGAAAATCCAGTTTCTGTTTGGTTCCCGGGAAAATACCGAAGTGGGTTCACAGTCATCATCGTGATCGGAGACTCGTCGCGAAATC TGCAATTGAAACTGATCAAGTCTCTTTCCCCACTCATTATGACGAGCTGCTCGATCAAGCCAAAACTGCTACTGAGCTAGCTTTGGTAGATGGCGTTAAG TTGATGGAGATTGAATTCCCAACTGCTGGACTTGAATCCGTACCAGGTGATGGTGAAGGAGGCATAGAAATGACAGACAGTATGCTGCTGATTCGACAGT TCTGCGACCGGTTCGTGAGCCCCGAGAAGGCCACAAGAACACGAATCTTCTTCCCGGAAGCAAATGAGGTCAAATTCGCGAGGGAGACCTCATTCGGAGG ATCGTCCCTCAAGCTCGACTACTTGACCAAGCCATCGTTCTTCGAAGACTTCGGTTTCAGCGAAAAGGTCCGAATGTCGGATCGTGTAAAGCCCGAAGAC GAAATGTTCCTAGTTGGATATCCATACTTCAATGTCAATGAAATGCTTGTCGTCGAGGAGCTCTACAATGAAGCTGTTGCGAACACGGACCGTAAGATGA TCATATTCAACGGAGAGCTAGACCGGATACGATCTGGTTACTATCCATCGTTCTTCTACCCGAAGCTGGCATCACTCACCAAGACTTTCTTCCCGTTTAT GGAGACGGTGTACTACGTCCATAACTTCAAGGGTCGCAACGGGGGGGTCCTCTTCAGGTGTTATCCCGGACCGTGGAAGGTCCTTCGGAAGGACAGGAGG AAGAATAACTCTTATGTGTGCCTTCATCAGCAGGAAGCTATGCCTTCTCTAAAGGAAGTTTCTCTAGACATTCTTCCATCGGCTTGA
AA sequence Show only first row Show all	>Lus10007599 pacid=23148077 polypeptide=Lus10007599 locus=Lus10007599.g ID=Lus10007599.BGIv1.0 annot-version=v1.0 MGSLPAIATVGHKSKVLVIGGTGYLGKRLVTASLAAGHETYVLQRPEIGVDIEKIQLLLSFKKAGASLVSGSFNDYRSLVDAVKLVDVVICAVSGVHIRS HQILLQLKLVDAIKEAGNVKRFLPSEFGTDPATMENAMEPGRVTFDDKMVVRKAIEEAGIPFTYISANCFAGYFLGGLCQPGFILPSREQVTLLGDGNQK AVYVDEDDIARYTIKMIDDPRTLNKTVYIKPPKNVLSQREVVGIWEKYIGKELKKTTLSVEEFLAMMKEQDYAEQVGLTHYYHVCYEGCLTNFEIGDEAG EATKLYPEVGYTTVEKMQFSSYSQSHHFLPPLAISPLPRKSSFCLVPGKIPKWVHSHHRDRRLVAKSAIETDQVSFPTHYDELLDQAKTATELALVDGVK LMEIEFPTAGLESVPGDGEGGIEMTDSMLLIRQFCDRFVSPEKATRTRIFFPEANEVKFARETSFGGSSLKLDYLTKPSFFEDFGFSEKVRMSDRVKPED EMFLVGYPYFNVNEMLVVEELYNEAVANTDRKMIIFNGELDRIRSGYYPSFFYPKLASLTKTFFPFMETVYYVHNFKGRNGGVLFRCYPGPWKVLRKDRR KNNSYVCLHQQEAMPSLKEVSLDILPSA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G48790			Domain of unknown function (DU...		Lus10007599 [exp]	0	1
AT4G04960			Concanavalin A-like lectin pro...		Lus10025441 [exp]	1.7	0.8859
AT2G45760		BAL, BAP2	BON ASSOCIATION PROTEIN 1-LIKE...		Lus10036571 [exp]	2.4	0.8731
AT1G18265			Protein of unknown function, D...		Lus10020457 [exp]	4.9	0.8671
AT3G25780		AOC3, AOC2	allene oxide cyclase 3 (.1)		Lus10033535 [exp]	12.0	0.8163
AT1G32100		ATPRR1	pinoresinol reductase 1 (.1)		Lus10010403 [exp]	15.9	0.8749
AT3G25900		HMT-1, ATHMT-1	Homocysteine S-methyltransfera...		Lus10041451 [exp]	16.1	0.8550
AT1G74950	ZIM	TIFY10B, JAZ2	JASMONATE-ZIM-DOMAIN PROTEIN 2...		Lus10013166 [exp]	16.9	0.8176
AT1G74950	ZIM	TIFY10B, JAZ2	JASMONATE-ZIM-DOMAIN PROTEIN 2...		Lus10008129 [exp]	18.3	0.8186
AT1G34300			lectin protein kinase family p...		Lus10013252 [exp]	19.1	0.8105
AT2G38360		PRA1.B4	prenylated RAB acceptor 1.B4 (...		Lus10012224 [exp]	20.2	0.8088

Compare expression of checked genes

Lus10007599 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.