Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G21390 925 / 0 B120 S-locus lectin protein kinase family protein (.1) AT1G61610 862 / 0 S-locus lectin protein kinase family protein (.1) AT1G61370 706 / 0 S-locus lectin protein kinase family protein (.1) AT1G61390 706 / 0 S-locus lectin protein kinase family protein (.1.2) AT1G61550 697 / 0 S-locus lectin protein kinase family protein (.1) AT1G11330 692 / 0 S-locus lectin protein kinase family protein (.1.2) AT1G61380 691 / 0 SD1-29 S-domain-1 29 (.1) AT1G61430 689 / 0 S-locus lectin protein kinase family protein (.1) AT1G11300 688 / 0 protein serine/threonine kinases;protein kinases;ATP binding;sugar binding;kinases;carbohydrate binding (.1) AT1G61500 688 / 0 S-locus lectin protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018408 [exp] 1646 / 0 AT4G21390 936 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10018407 [exp] 1521 / 0 AT1G61390 732 / 0.0 S-locus lectin protein kinase family protein (.1.2) Lus10006742 [exp] 964 / 0 AT4G21390 800 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10020080 [exp] 879 / 0 AT4G21390 730 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10020052 [exp] 658 / 0 AT1G11340 858 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10038557 [exp] 649 / 0 AT4G27290 803 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10038552 [exp] 645 / 0 AT4G27290 879 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10037865 [exp] 645 / 0 AT4G27300 804 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10006746 [exp] 637 / 0 AT1G11340 836 / 0.0 S-locus lectin protein kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G037300 [exp] 1056 / 0 AT4G21390 922 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.004G027800 [exp] 1038 / 0 AT4G21390 941 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.011G037600 [exp] 1037 / 0 AT4G21390 899 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.004G027900 [exp] 1031 / 0 AT4G21390 915 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.011G039100 [exp] 724 / 0 AT1G11330 859 / 0.0 S-locus lectin protein kinase family protein (.1.2) Potri.011G039200 [exp] 717 / 0 AT1G11330 864 / 0.0 S-locus lectin protein kinase family protein (.1.2) Potri.011G039300 [exp] 702 / 0 AT1G11330 829 / 0.0 S-locus lectin protein kinase family protein (.1.2) Potri.011G038800 [exp] 699 / 0 AT1G11330 838 / 0.0 S-locus lectin protein kinase family protein (.1.2) Potri.004G027400 [exp] 698 / 0 AT1G11330 872 / 0.0 S-locus lectin protein kinase family protein (.1.2) Potri.011G039000 [exp] 696 / 0 AT1G11330 797 / 0.0 S-locus lectin protein kinase family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00954 [flax] [poplar] S_locus_glycop S-locus glycoprotein domain CL0016 [flax] [poplar] PKinase PF07714 [flax] [poplar] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase CL0168 [flax] [poplar] PAN PF08276 [flax] [poplar] PAN_2 PAN-like domain CL0168 [flax] [poplar] PF01453 [flax] [poplar] B_lectin D-mannose binding lectin
Representative CDS sequence Show only first row Show all	>Lus10007600 pacid=23140338 polypeptide=Lus10007600 locus=Lus10007600.g ID=Lus10007600.BGIv1.0 annot-version=v1.0 ATGACCGGCGATTGTACACCCCTCCATTTCCACCTCTTATACTCCCTCCTTTTCCTCGCCGTATCCTGCTCAGCCGCCAACCAGCTCAACCGAGGCGAAT CCTTGAGAGACGGCGATACTCTGCTCTCAGTCGGCGACCGGTTCGAATTGGGATTCTTCTCCCCTGGAAGATCGACCTCCCGGTACCTCGCGATTTGGTA CCACGACGCTCAGGAGAACGATTCGGTAATCTGGGTAGCTAACCGAGACAGACCGGTCCCCGATCGAACCGGTTTACTCACCTTCGCCCCAGACGGTAAT CTAATAATCACCGCCGGCAACGGTACTACCCCAATTTGGTCCACCAACTCAACAACGATTGAAGGAAATGTCACCGTAGCGCTTTTGTCGATGACAGGGA ATTTAATCCTTTCACGGAACGAGACGCTTGGAGACGTCGATCGAGCATTTTGGCAGAGCTTCCAGAATCCGACTGACACGTACCTGCCGAACATGAGAGT CCTGGTGGACACGTCCGCAGGGGAGAACCACGCCTTCAGGTCGTGGAAGTCGCTAAACGACCCGTCGTTTGGAAACTTTACTTTAGGGGTGGACCCACGC GGAGCGCCCCAGATTGTGATCTGGGACGAGCTCCGACGAAGGCGGTGGAGGAGCGGTCAGTGGAATGGATTGATCTTCACCGGAGTTCCCAACATGACGA CGTTCACTAATTTCCAGTACGGGTTCAAGCTGACAAGAGAAGAGGACGGGAGGCTCTACTTCACTTACACCCCTTCGAATTCCACCGCCCTGCTCCGGTT CCGAATAGGATACGATGGGAAGGAGGAGCAGCTCCGGTGGAACGAACGGTCGAGAAATTGGGATGTTCTGCAGAGGCAACCGGAGGACGAATGCGAGGGA TACAACACGTGTGGCGAATTTGGAGTCTGTAAAGAATCGGCGAGTCCGAAGTGCGGGTGTATGGACGGGTTCCGGCCTAGGGATTTAGGGGAGTGGAATC GGGGGAATTTCTCTGGTGGGTGCGTGAGGAACACGGCGGTGGAATGTCGCCGGAGAAATGGCAGTGAGACGGAAATTGAAACCGGGGGCGATGGGTTTAA AGCGATGAGGTGTGCTAAGTTGCCTGATTTTGCTGACGTGTTGACCGGACTCTCCCCGGATTCTTGCCGGGAGAGGTGCTTGGAGGATTGCGATTGCAAT GCTTACTCGTCCATCAGCGGGATTGGCTGTATGATATGGAGAGGTGGATTGGTTGATGTTCAGCATTTCAGTGGCGCTGGAAATGTCATGAATCTCAAGC TCGCTGCCTCCGAACTCGATGATGGCAAGAAACTGACAACACCAGTAATAGTAGGGATTGTTCTTGCATCAGTAGTCTGTTTAGCCATTGCTGTATGGCT AATTTGCAGAATCAAAAGGAAACTCAAAGTTTTGCCAGCATCAGCTGCATCAGTATCAGGACCAGTACAACAGAACGATTTGTCACTGCTCGATCCGACC AAGAGCAGGGAGTACTCAACCGATCTTTCCGGTCCAACAATTGAAAGCGGTCGGATGAGTCATGCTGATCTTCCACTGATGAACATCAACGTTGTGGCTC TCGCCACGAATCACTTCTCTGCGGAGAACAAGCTCGGGCAGGGTGGATTCGGACCGGTTTACAAGGGAACTCTTCTTGGAGGGGAGGAGATTGCGGTGAA GAGGCTGTCGAGGATCTCGGGGCAAGGACTCGAGGAGTTCAAGAACGAAATTAGTCTGATTGCGAAACTTCAGCATCGGAATTTGGTGAGGTTGTTAGGG TATTGTGTTCAGGGCGAGGAGAAGATGTTGATCTATGAGTACATGCCGAACAAAAGCTTGGACTTCTTTCTCTTTGACTCGAAGAAGCAAGCGACTTTGG ACTGGGGGAAGCGGTTCACGATCATCGAAGGGATCGCGCGTGGCCTCCTTTACCTCCATAGAGATTCGAGGTTGAGGATAATCCACCGCGATCTCAAGGC TAGTAACATTTTGCTTGACGAGGAGATGAACCCCAAGATATCGGATTTCGGAATGGCTAGGATATTCGGTGGCAACCAAAATGAAGCTAACACTAACCGA GTTGTCGGGACATATGGTTACATGTCACCAGAGTACGCAATGGAAGGTCTGTTCTCGGTGAAGTCAGACGTGTATAGCTTCGGGGTGTTAGTACTCGAGA TCGTGAGCGGTAGGAGGAACACGAGCTTCCGTTCGTCGGACCATGTCAACCTGATCTCGTACGCGTGGGACCTTTGGAGCGAGGGAAGGCCGATCGAGCT CGTGGATCCGTCAATTCGAGAGTCGTGCATCAAGGAGGAGCAGCTTCTGAGGTGCATACAGCTAGGGATGATATGCGTGCAAGACAACCCGGTCCAGAGG CCTACGATGGCGGCGGTGATGCTGATGCTTGAAAGCGATAGCCCGAGCTTGCCAATCCCGAGGCAGCCTACCTTTACGTCATCTATGCGAGCTTCCGTCG ATAGAGATCTCTACTCCGAAGGTCAGGATCTTGTGTCCAATGAGTTGACTGCTACAATGGGCGGATTGTCGATTGCTTGTGAAGAAAGGCAAGCCACGGT ACTCACGTTTCTTGGAATGCAATACGAAACGACGATGGCTCGCATTCTCTACCATGACGGTGAATACTCGGGCAATTTGCTGTCAAACGGGCAGGCTGGG CGAGCCACATGTCAGGTTAGTCGGTTCATGGATTCGTCGGGTTGCGGGTTCGCAGGGTCACGGATTATTCGTCGGCAAGGCGAGTCACGGGCTGGCATGG ACCAGGCTGGGGTCAGCATTTTGCCAGCTCTACCGGAGTGTCATGAGCTTTTTACTCTGATGGGTCATCGAGCTGGATTTGCTCTGTTTTCACTGTATGC TCTGTTTCTTCTTCTTCTTCTGATAACAAATTTCTCACTCTGTTCTTCGTTAACGACGAATCTCACTTCCTCTTCCATTCCTCTTCTCTTAAACCAAACC TTAACTTCCACCAACGAAGTCTTCGAGCTGGGATTCTTCGTTCCGGACAGCAACAGATCCAGAAGCTTCTATCTAGCGATCCGATTCAAGCAGACTTCTC CGCAGACGATCGTCTGGGTGGCGAATCGGGAAGCTGCCGTAACGGAGGAGTCTGCTAGACTGTTAGTTAACGGAGCTGACGGGAACTTGGAGCTGCAGGA CGGCAGACGGCGTCGTATTTGGGCTACGAACGTTAGCTCGTCGGATAATTCCACGGCGGCGATTCTTCAAAACGACGGAAACTTGGTTTTGCGAAGCGGA AGAAGTGGAGAGATCCTATGGCAGAGCGGCGGTGATAATTTTGGAGACACTTTGATCGCTGGGAGATGGCTGATGTTCAATCAGAGCAATCCGATGGCTA GGCCGTTCAGGCTAAATTCATGGAAATCCACCGGAGATCCGTCGCCGGGGAGTTTCACGGTGGGGTTTTTGTTACAGTCGCCGCCTCAGGCGACGATATC TCGAGACGGTGGACCCTATTGGAGGTCTGGACCATGGGACAGAGCGAGGTTTACCAACATTCCTGACATGGACACTGATTATCAAAGTTCTCTGACGCTT ATAGAGGATCAAGGACTGGTTTATCTGTCGTTGATTCCTCCAAGGAACTGTACTTACGTCACGTTTCGAATGTCGTCGACCGGATCGTTGCAGCTGAGGT GCTGGGACGGGATTCGAGGGTGGTATACTCGGTGGGAGACTCCGAAGAGTGAGTGTGAGGTTTATGGAGCTTGTGGGGAGAATGGTATATGTGGGAGGGA TGATCCGTTGACGTGCGAATGTGTTCAAGGGTTCGTGCCAAATTCGGAGGACGAATGGAAGGTTGGGAATTGGAGTAGAGGGTGTGTTAGGAGGACTGAG TCAGTCTGTGGGAGGAATGTGAGTGATAGTAATGGTGGTGGTGATGGGTTTTTGAAGCTGAGTGGAGTGAATGTACCTGAAAAGTATGAGTTCATGAGGG TTTGGGATGACAATGAGTGTTCGAGGCAGTGCTCGAACAACTGTTCGTGCACTGCCTATTCATATGTGGACGGGATCGGGTGCTTACTGTGGTGGGGGGA GATTGTTGATCTGCAGAGGCTCGAGTTTGCTGGGAAGGATCTCTACATTCGTGTTGCTCGAAGCGAATTGAGTGATGGTAAGAGGAGTTCACCAAGGCTT GTGGTTCTGCTTCCTACTGTTCTTGGGACTCTTGCTGTAGCTGCATTGATTTTGTGTTTGATAATTTGGAAGAAAAGAAAGGGAAACACAAAGGGTAAAA GAACTGACAACTACTCGGGTGGCAGTACACAGAGGCTGAACTATATGCAGAAGGGAAATCCAGATGAGCAAGAGTCGTTCGAGCTGCCAATGTTTGATTT GGAGAGCATCGAACTCGCGACAAACAATTTCGACATCGGTAACTTGCTTGGGAGAGGAGGGTTTGGTCCTGTTTACCTAGGAAAGCTACCGGATGGGAAG ATTGTGGCGATCAAGAGGCTTTCGAGCTGCTCGGGACAAGGAGCCGACGAGTTCAAGAACGAGATCATGTTGATATCGAAGCTCCAGCACAGGAATCTAG TCAGGCTACTTGGCTGCTGTGTTGAAGGACTGGAGAAGATGTTGATCTACGAGTTCATGCCCAACAAAAGCTTGGACACTTATCTCTTCGATTCGACGAA GAAGGTGGAACTGGATTGGCCTACACGGTGGAACATCATACACGGGATTGCTCGAGGGCTTCTCTATCTCCACCGCGATTCGTTGTTAAGAATCATACAC AGAGATTTGAAGGTTAGTAATATTCTGCTCGACGAGAAGATGAACCCGAAGATATCTGATTTCGGGCTGGCGAGGATCTTCGAGGGGACACAGGATTTAG CTAGTACACACAAGGTGGTGGGAACATTGGGGTACATGTCTCCAGAGTACTTACTAGCAGGAATGTTCTCCGAGAAATCCGACGTGTTCAGCTTCGGGGT TCTTCTACTGGAAATCGTTAGCGGTAGGAAGACTACGAGCTTCCATTACGAGGAGCAGCATTCAAGCCTTCTTTCCTATGCATGGCGATCATGGACTGAA ACGGAAGGAGTGGGAATGGTAGACGATGCAGTGGCCAAATCGTTCAACGCATCGGAAGTGAGCAGATGTGTGAACGTGGGTCTACTCTGTGTGCAAGATC ATGCTACGGACAGGCCAACAATGGCGGATGTGGTCTCGATGCTCAGCAGCGAAACGAGCCTTCCTCGCCCGAATCAACCGACGTTCACGTTCCAGAACAG GACTCCGACTGTTAACAACTTCTTTGGTGGCGGTGGTCAGTCTTCCAGTGCAGAGAAATGGTCCGTCAATGACATTACTGAATCTGTCGTTGAAGGCCGG TGA
AA sequence Show only first row Show all	>Lus10007600 pacid=23140338 polypeptide=Lus10007600 locus=Lus10007600.g ID=Lus10007600.BGIv1.0 annot-version=v1.0 MTGDCTPLHFHLLYSLLFLAVSCSAANQLNRGESLRDGDTLLSVGDRFELGFFSPGRSTSRYLAIWYHDAQENDSVIWVANRDRPVPDRTGLLTFAPDGN LIITAGNGTTPIWSTNSTTIEGNVTVALLSMTGNLILSRNETLGDVDRAFWQSFQNPTDTYLPNMRVLVDTSAGENHAFRSWKSLNDPSFGNFTLGVDPR GAPQIVIWDELRRRRWRSGQWNGLIFTGVPNMTTFTNFQYGFKLTREEDGRLYFTYTPSNSTALLRFRIGYDGKEEQLRWNERSRNWDVLQRQPEDECEG YNTCGEFGVCKESASPKCGCMDGFRPRDLGEWNRGNFSGGCVRNTAVECRRRNGSETEIETGGDGFKAMRCAKLPDFADVLTGLSPDSCRERCLEDCDCN AYSSISGIGCMIWRGGLVDVQHFSGAGNVMNLKLAASELDDGKKLTTPVIVGIVLASVVCLAIAVWLICRIKRKLKVLPASAASVSGPVQQNDLSLLDPT KSREYSTDLSGPTIESGRMSHADLPLMNINVVALATNHFSAENKLGQGGFGPVYKGTLLGGEEIAVKRLSRISGQGLEEFKNEISLIAKLQHRNLVRLLG YCVQGEEKMLIYEYMPNKSLDFFLFDSKKQATLDWGKRFTIIEGIARGLLYLHRDSRLRIIHRDLKASNILLDEEMNPKISDFGMARIFGGNQNEANTNR VVGTYGYMSPEYAMEGLFSVKSDVYSFGVLVLEIVSGRRNTSFRSSDHVNLISYAWDLWSEGRPIELVDPSIRESCIKEEQLLRCIQLGMICVQDNPVQR PTMAAVMLMLESDSPSLPIPRQPTFTSSMRASVDRDLYSEGQDLVSNELTATMGGLSIACEERQATVLTFLGMQYETTMARILYHDGEYSGNLLSNGQAG RATCQVSRFMDSSGCGFAGSRIIRRQGESRAGMDQAGVSILPALPECHELFTLMGHRAGFALFSLYALFLLLLLITNFSLCSSLTTNLTSSSIPLLLNQT LTSTNEVFELGFFVPDSNRSRSFYLAIRFKQTSPQTIVWVANREAAVTEESARLLVNGADGNLELQDGRRRRIWATNVSSSDNSTAAILQNDGNLVLRSG RSGEILWQSGGDNFGDTLIAGRWLMFNQSNPMARPFRLNSWKSTGDPSPGSFTVGFLLQSPPQATISRDGGPYWRSGPWDRARFTNIPDMDTDYQSSLTL IEDQGLVYLSLIPPRNCTYVTFRMSSTGSLQLRCWDGIRGWYTRWETPKSECEVYGACGENGICGRDDPLTCECVQGFVPNSEDEWKVGNWSRGCVRRTE SVCGRNVSDSNGGGDGFLKLSGVNVPEKYEFMRVWDDNECSRQCSNNCSCTAYSYVDGIGCLLWWGEIVDLQRLEFAGKDLYIRVARSELSDGKRSSPRL VVLLPTVLGTLAVAALILCLIIWKKRKGNTKGKRTDNYSGGSTQRLNYMQKGNPDEQESFELPMFDLESIELATNNFDIGNLLGRGGFGPVYLGKLPDGK IVAIKRLSSCSGQGADEFKNEIMLISKLQHRNLVRLLGCCVEGLEKMLIYEFMPNKSLDTYLFDSTKKVELDWPTRWNIIHGIARGLLYLHRDSLLRIIH RDLKVSNILLDEKMNPKISDFGLARIFEGTQDLASTHKVVGTLGYMSPEYLLAGMFSEKSDVFSFGVLLLEIVSGRKTTSFHYEEQHSSLLSYAWRSWTE TEGVGMVDDAVAKSFNASEVSRCVNVGLLCVQDHATDRPTMADVVSMLSSETSLPRPNQPTFTFQNRTPTVNNFFGGGGQSSSAEKWSVNDITESVVEGR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G11300			protein serine/threonine kinas...		Lus10007600 [exp]	0	1
AT4G28400			Protein phosphatase 2C family ...		Lus10039853 [exp]	2.8	0.8603
AT4G17500	AP2_ERF	ATERF-1, AtERF1	ethylene responsive element bi...		Lus10040165 [exp]	5.2	0.8370
AT2G41410			Calcium-binding EF-hand family...		Lus10038970 [exp]	5.3	0.8568
AT2G41410			Calcium-binding EF-hand family...		Lus10027261 [exp]	6.0	0.8361
AT1G10140			Uncharacterised conserved prot...		Lus10018665 [exp]	8.8	0.7876
AT4G21700			Protein of unknown function (D...		Lus10030937 [exp]	8.8	0.7992
AT2G05940		RIPK	RPM1-induced protein kinase, P...		Lus10034897 [exp]	11.0	0.8286
AT2G30860		GLUTTR, ATGSTF7...	glutathione S-transferase PHI ...		Lus10020735 [exp]	13.2	0.8107
					Lus10039778 [exp]	17.2	0.8031
AT2G36320			A20/AN1-like zinc finger famil...		Lus10035603 [exp]	22.2	0.7784

Compare expression of checked genes

Lus10007600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.