Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G11340 491 / 2e-162 S-locus lectin protein kinase family protein (.1) AT1G11410 461 / 3e-151 S-locus lectin protein kinase family protein (.1) AT4G21380 453 / 2e-148 ARK3 receptor kinase 3 (.1) AT1G65790 442 / 2e-144 ARK1 receptor kinase 1 (.1) AT4G27300 431 / 4e-140 S-locus lectin protein kinase family protein (.1) AT4G27290 430 / 4e-140 S-locus lectin protein kinase family protein (.1) AT1G65800 424 / 3e-137 ARK2 receptor kinase 2 (.1) AT1G11330 404 / 2e-129 S-locus lectin protein kinase family protein (.1.2) AT1G61500 401 / 7e-129 S-locus lectin protein kinase family protein (.1) AT1G61440 397 / 1e-127 S-locus lectin protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018406 [exp] 1165 / 0 AT1G11340 694 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10041680 [exp] 643 / 0 AT1G15520 1646 / 0.0 Arabidopsis thaliana ATP-binding cassette G40, ATP-binding cassette G40, pleiotropic drug resistance 12 (.1) Lus10024064 [exp] 588 / 0 AT1G11340 735 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10007604 [exp] 553 / 0 AT1G11340 694 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10007610 [exp] 536 / 1e-180 AT1G11410 693 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10013244 [exp] 526 / 3e-177 AT1G11340 669 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10013246 [exp] 521 / 8e-175 AT1G11340 678 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10018402 [exp] 510 / 2e-170 AT1G11340 691 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10034637 [exp] 500 / 2e-166 AT1G11340 660 / 0.0 S-locus lectin protein kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G035700 [exp] 577 / 0 AT1G11340 743 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.004G028300 [exp] 573 / 0 AT1G11340 742 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.011G036400 [exp] 571 / 0 AT1G11340 726 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.011G035800 [exp] 570 / 0 AT1G11340 705 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.011G036600 [exp] 563 / 0 AT1G11340 741 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.011G036100 [exp] 554 / 0 AT1G11340 719 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.001G411000 [exp] 457 / 3e-150 AT4G27290 775 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.011G035600 [exp] 458 / 4e-150 AT4G21380 711 / 0.0 receptor kinase 3 (.1) Potri.011G125050 [exp] 456 / 1e-149 AT4G27290 870 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.001G411100 [exp] 453 / 1e-148 AT4G27290 746 / 0.0 S-locus lectin protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF07714 [flax] [poplar] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase CL0168 [flax] [poplar] PAN PF08276 [flax] [poplar] PAN_2 PAN-like domain CL0168 [flax] [poplar] PF01453 [flax] [poplar] B_lectin D-mannose binding lectin
Representative CDS sequence Show only first row Show all	>Lus10007601 pacid=23140301 polypeptide=Lus10007601 locus=Lus10007601.g ID=Lus10007601.BGIv1.0 annot-version=v1.0 ATGGGAGCTTCCTCATTTCCAAAGGCGGTATATGGTACAGCAGGATCCCGCAGCAGATCGTGGTTTGGGTTGCAAATCGCGACAATCCAAATCAATGATT CATCAGGGGAGGTCTCATTTGATCCCATTACTGGACACCTAATTATTGGGGTTCGGTCTCGACTCGTTTGGTCAGCTGATGTTTCAGGAGCTGCATTGTC AGCTCAGCTTATGGACACAGGCAATCTGGTTCTGTTTAACGGGAGAAGGAGAATGGTTTGGCAAACATTTGATCACCCCACGGATACCATCCTACAAGGG ATGGGATTGGGGTTCGATCGGAGGACGAATAGGTTGTCATGGTTAAGTTCGTGGAGATCGGGTGATGATCCCGGGACAGGAGATTACGAGCTGAAGCTTG ACATTAGAGGGTCAGTACCGCAGCTGTTTCTGTTGAAAGGGAGGACGACGGTTTACTGGAGGAGCGCGCCATGGCCACGGAAGAAGTACCCTCATGTGTA CAATTACTCATTCGAGAACAATGTGGATGGAGTTCAGTTCTCTTATTTCACCTATGATCCTTCTGTGACCATCAGTATTGTGCTTGATGAGTTGGGGGTT CTGAAGCCGATGGTGAACACGTTCGAGTGTTCTTGTTTGCCCGGGTACAAACCGAAGTTTCCCAAGGAGTGGTCTTTGAGAGTTGGGAGTGGTGGGTGTG TAAGGAAAAGACTAAGAGTGGAGAGTTCTTCTTCAACTTGTGGTGGAGATGGGTTTTTGAGGGTTGAGAATGTTAAGCTCCCCGATGCTTCTGCTGCGAT TTGGGTGGATACAATGTTCGATGCCGAATGTGGGAACGAGTGCTTAAGAAACTGTTCGTGTTCTGCATATGCAGTTGTGGAAGTGGATGATGGGAAAGGG AGACTGTGTATGCATTGGCATGGTGTGTGGCTGGACACGACGAATCGTGGAATAACCGACGCGTATGATCTCTATGTTCGTGTTGACACAGTGGAATTAG ATGAACTCCATACTGATGTTATGTTTGTTCTAAGCGACATAGCGAAGGATAAATCGACGAGCAGAAGATCTAGTACCACCGGGATTGAAAACGAACGGAC TTACCATCAGGACCTTAGATTTTTCAGTCTCAGTTCTGTATCTGCAGCAACTAGTCACTTCTCTGCAGCTAACAAGATTGGTCATGGTGGCTTTGGTATT GTTTACAAGGGACAAATGCAGGATGGTCAGGAGGTTGCTGTTAAAGTACTGAGTAAGAATTCGGGGCAAGGAGTGGAGGAATTCGAGAACGAAGCTGAGT TAATTGCGAAGCTTCAGCACCGAAATCTCGTCAAACTGTTGGGATGCTGCATTGAGCATCAGGAGCAGATACTGCTTTACGAGTACTTGGCAAATGGAAG CTTGGATTCGGTTCTTTTTGGTGTTGTTGGACTGGAGCAAGCGGTTCAGAATCATAGTCGGTATAGCCCGAGGGATCTCATAGTCGGTTTAGCCCGAGGG GTTTTGTATCTAAACCCCGATTTAAGGCTTAGAGTGATCCACAGGGACCTGAAATCCAGCAACATTCTCCTGGATGCAGGCATGAACCCAAAAAACTCTG ATTTCGGGACAGCTAGAGTATGCAAAGGCGATGTACTTAGAGATCGAACGCGCAGAATCGTTGGAACATATGGTTACATGTCACCGGAATATGCAGTGCT CGGACATTTCTCAACGAAATCCGATGTCTTTAGTTTCGTGGTCATATTGCTCGAGATCATAAGCGGCATCAGGATCAATGCGCTCCGCGAAAAGGATCAG TCCCCGAACTTGATCGGACATGTAAGGGAGCTATGGAGATCAGACAGAGAAAGATCAATGGAGGTAGTTGATCCATTATTGGAGGAAGAAGATAAGAACA AGTGCTGGGATGAGATCTTGAGATGTATACAGACAGTTCTGCTATGTGTCCAGGAAAAACCAGACAACAGACCAGACATGTTAGCAGTACTTCTGATGCT GAACGGTGAAACAACACTGCCTTACCCGAATCAAACCGCTTTCATTTTCCGAGAACCCGAATCGAGTAAACTCGCCAAAGAAGATGAAGAACAATGCTCA ATCAATCAGGTCACTATCACAATGTGTACCTCTCGCTAG
AA sequence Show only first row Show all	>Lus10007601 pacid=23140301 polypeptide=Lus10007601 locus=Lus10007601.g ID=Lus10007601.BGIv1.0 annot-version=v1.0 MGASSFPKAVYGTAGSRSRSWFGLQIATIQINDSSGEVSFDPITGHLIIGVRSRLVWSADVSGAALSAQLMDTGNLVLFNGRRRMVWQTFDHPTDTILQG MGLGFDRRTNRLSWLSSWRSGDDPGTGDYELKLDIRGSVPQLFLLKGRTTVYWRSAPWPRKKYPHVYNYSFENNVDGVQFSYFTYDPSVTISIVLDELGV LKPMVNTFECSCLPGYKPKFPKEWSLRVGSGGCVRKRLRVESSSSTCGGDGFLRVENVKLPDASAAIWVDTMFDAECGNECLRNCSCSAYAVVEVDDGKG RLCMHWHGVWLDTTNRGITDAYDLYVRVDTVELDELHTDVMFVLSDIAKDKSTSRRSSTTGIENERTYHQDLRFFSLSSVSAATSHFSAANKIGHGGFGI VYKGQMQDGQEVAVKVLSKNSGQGVEEFENEAELIAKLQHRNLVKLLGCCIEHQEQILLYEYLANGSLDSVLFGVVGLEQAVQNHSRYSPRDLIVGLARG VLYLNPDLRLRVIHRDLKSSNILLDAGMNPKNSDFGTARVCKGDVLRDRTRRIVGTYGYMSPEYAVLGHFSTKSDVFSFVVILLEIISGIRINALREKDQ SPNLIGHVRELWRSDRERSMEVVDPLLEEEDKNKCWDEILRCIQTVLLCVQEKPDNRPDMLAVLLMLNGETTLPYPNQTAFIFREPESSKLAKEDEEQCS INQVTITMCTSR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G11340			S-locus lectin protein kinase ...		Lus10007601 [exp]	0	1
AT4G12480		PEARLI 1 1, PEA...	EARLY ARABIDOPSIS ALUMINUM IND...		Lus10036494 [exp]	1.0	0.8894
AT2G02850		ARPN	plantacyanin (.1)		Lus10028641 [exp]	4.7	0.8133
AT2G02850		ARPN	plantacyanin (.1)		Lus10028640 [exp]	9.4	0.7950
					Lus10021851 [exp]	10.7	0.8054
AT4G12490			Bifunctional inhibitor/lipid-t...		Lus10024619 [exp]	11.7	0.6717
					Lus10008791 [exp]	12.3	0.8054
AT1G02520		MDR8, ABCB11, P...	multi-drug resistance 8, ATP-b...		Lus10004530 [exp]	13.8	0.8054
					Lus10012440 [exp]	15.1	0.8054
AT4G14000			Putative methyltransferase fam...		Lus10023222 [exp]	16.2	0.6533
					Lus10031183 [exp]	17.7	0.8040

Compare expression of checked genes

Lus10007601 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.