Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G27290 643 / 0 S-locus lectin protein kinase family protein (.1) AT4G21380 481 / 4e-158 ARK3 receptor kinase 3 (.1) AT1G65790 476 / 1e-156 ARK1 receptor kinase 1 (.1) AT1G65800 473 / 2e-155 ARK2 receptor kinase 2 (.1) AT1G11340 414 / 4e-132 S-locus lectin protein kinase family protein (.1) AT4G11530 406 / 2e-131 CRK34 cysteine-rich RLK (RECEPTOR-like protein kinase) 34 (.1) AT4G03230 410 / 3e-129 S-locus lectin protein kinase family protein (.1) AT4G27300 403 / 1e-128 S-locus lectin protein kinase family protein (.1) AT4G23180 397 / 2e-128 RLK4, CRK10 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) AT4G05200 394 / 5e-127 CRK25 cysteine-rich RLK (RECEPTOR-like protein kinase) 25 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018405 [exp] 781 / 0 AT4G21380 952 / 0.0 receptor kinase 3 (.1) Lus10007603 [exp] 635 / 0 AT4G21380 942 / 0.0 receptor kinase 3 (.1) Lus10037731 [exp] 511 / 5e-173 AT4G27290 644 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10006745 [exp] 423 / 8e-138 AT1G11340 774 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10014812 [exp] 424 / 6e-136 AT4G27290 749 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10016871 [exp] 422 / 8e-136 AT4G27290 752 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10037732 [exp] 420 / 5e-135 AT4G21380 768 / 0.0 receptor kinase 3 (.1) Lus10038552 [exp] 420 / 9e-135 AT4G27290 879 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10037729 [exp] 419 / 3e-134 AT4G27290 750 / 0.0 S-locus lectin protein kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G028000 [exp] 592 / 0 AT4G21380 1020 / 0.0 receptor kinase 3 (.1) Potri.011G037100 [exp] 570 / 0 AT4G21380 982 / 0.0 receptor kinase 3 (.1) Potri.011G036612 [exp] 566 / 0 AT4G27290 655 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.011G125351 [exp] 464 / 2e-152 AT4G27290 748 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.011G125151 [exp] 463 / 7e-152 AT4G27290 757 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.001G414077 [exp] 457 / 1e-149 AT4G27290 855 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.011G125050 [exp] 441 / 4e-143 AT4G27290 870 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.011G125501 [exp] 431 / 4e-141 AT4G27290 709 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.011G125301 [exp] 435 / 9e-141 AT4G27290 775 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.001G411700 [exp] 434 / 1e-140 AT4G27290 800 / 0.0 S-locus lectin protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF12398 [flax] [poplar] DUF3660 Receptor serine/threonine kinase PF00954 [flax] [poplar] S_locus_glycop S-locus glycoprotein domain CL0016 [flax] [poplar] PKinase PF07714 [flax] [poplar] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase CL0016 [flax] [poplar] PF11883 [flax] [poplar] DUF3403 Domain of unknown function (DUF3403) CL0016 [flax] [poplar] PF01453 [flax] [poplar] B_lectin D-mannose binding lectin
Representative CDS sequence Show only first row Show all	>Lus10007602 pacid=23140298 polypeptide=Lus10007602 locus=Lus10007602.g ID=Lus10007602.BGIv1.0 annot-version=v1.0 ATGAAACCCCGCCAAAGAATCACAACAAAGATCCATCTTTTCTTCTTCTCCTTCATAATTTCCCTCTTCCCCTTACTCTGCTCCGCCGCCGACGTCCTCA CCGCCGCCCAATCCTTAGTCAACAACCAGACCCTCCTCTCCGCCGCCGGAGTCTTCGAGCTGGGATTCTTCACTCCGGAAGAATCCAACAAGTGGTACTT AGGCATCTGGTACAAAAACATCCCTCAACGAACCTACGTCTGGGTCGCCAATCGCGATTCCCCTCTCCGGAACCTTTCCTCCGCCGAATTCAAATTTGAT TCCAGCTCGATCGTCGTCGTCAGTGAAGACAGAACTCTATGGTCCTCGAACGGGACCGGAGCGGTCCTGGATCCTGTTATTCAGTTGCTCGATACGGGGA ATCTCGTTCTCCGGAACGGGACGAATCAGATTCTATGGCAGAGCTTCGATCATCCGGTGGACACTCTGCTCCCGGACATGAAACTAGGGTGGAATCTCGA GACCGGATTCGAAACTTACTTAAATTCATGGGCGGAGAAGGACGATCCGGGTACTGGGAAACTGTCATTCAAGATGAATTACTCTGGTTTTCCGGAGTTC TTCCTCATCGACGGCGGCAGAGTTGATTACCGGAGCGGGCCGTGGAACGGCCGGCGATTTAGCGGCGTGCCCGAAATGCAGCCGTTGGATTACATCTCAT TCAACTTCGTCACATCGGAGAAAGAAGTGTACTACTCCTTCCAGGTGTCATCGTCGGAGATCTACTCCCGTCTCACCGTGACACCAGACGGGACTCTCCG GCGGTACACATGGATCCCTGACATTGGTCAGTGGAAGCCGTTCTGGTACGCTCCCAAGGACCAATGTGACAGCTATAAAGAGTGCGGGAATTTCGGAATC TGCGATTCGAATGCTTCCCCTGTTTGTAAGTGTACGCGTGGATTCCGGCCGAGGAACCCGGAGGCGTGGGAGCTGCGGGACGGGTCGGGCGGGTGTGCTC GGAAGACGGATTTGGACTGTCCGAGGGATAAGTTTTTGAAATTGGGGAATGTTAAGCTGCCGGAGAGCAACGGTGGAGGCACGGCCACCTTCATCATCGG AATATCAGCCGGCATCGGATCTCTCCTCATACTCCTCACCATCTGCCTAATCTGGAAAAGAAAAAACCTGTCAGCTTTCTGTCAAAACACGAAACACCAC AAATCCCATCTAGAAAGAAGCCAGGACTCGTTCCTAAACGAAGCAGCAATCTCAAGCAAGAGGGACAACCACTACTCGGGCGAAAACAATGCCGCGGAGG AAGTGGTGGAGCTGCCATTGTTCGATTTCGGAACAATGGCAGCCGCCACCAACAACTTCTCCGAGGACAACAAGCTGGGACACGGTGGGTTCGGAGTTGT TTACAAAGGCAGGATGGTGGATCATTATGAAGGGCATGGTGACGTGGCGGTGAAGAGGCTTTCAAGGAGTTCGGGGCAAGGATCGGAGGAGTTCAAGAAC GAGGTCCAGCTGATTGCCAAGCTTCAGCATAGGAATCTTGTGAGGCTTGTGGGTTGCTGCGTTGAGATGGATGAGAAAATGCTGGTTTATGAGTACATGG AGAATCGAAGCTTGGACTCCATCATTTTCAATAGATCAAAGAGCAACTTGCTAACATGGCAAAGAAGGTTCAACATACTATGTGGCATCGCTAGAGGCCT GTTATATTTACATCAAGACTCGAGATTCAGAATAATTCATAGAGACCTTAAAGCGAGTAATATTCTGCTAGACGCCGAATGGACTCCCAAAATATCCGAT TTCGGTATGGCTAGGATATTTGGTACCGATCAGACAGAAGCTTGTACCAGAAGAGTAGTCGGAACATATGGTTATATGTCTCCAGAGTATGCAATGGATG GTCACTTCTCGGTCAAGTCAGACGTCTTTAGCTTCGGAGTCCTGGTAATAGAGATTATTACGGGGAAGAAAAACCGCGGATTCTACCTCCCGAACAGCGA GCTTAACCTCCTTGGACACTGTTGGAAGTTGTGGAAGGGAGGGCAAGGCTTGGAACTGGTGGATGAAGCAATAGGAAGTTCATACTCAGCTTGTGAAGCT CTTAGGTGCATACATGTCGGACTTTTGTGCGTACAAGAAAGGGCTGAGGACAGGCCAACGATGGGATCAGTGTTGTTGATGCTCAGCAGTGAAACGGCGT CGTTGCCTACGCCGAAAAACCCAGGGTTTTGCCTTGGGAGGAGCCCTTTGGAGACTGATTCTTCTTCTGGGAAACAGGATGAGACTTTTACTGTTAACCA AGTTACAGTTACTGTGCTTGACGCTCGGTAA
AA sequence Show only first row Show all	>Lus10007602 pacid=23140298 polypeptide=Lus10007602 locus=Lus10007602.g ID=Lus10007602.BGIv1.0 annot-version=v1.0 MKPRQRITTKIHLFFFSFIISLFPLLCSAADVLTAAQSLVNNQTLLSAAGVFELGFFTPEESNKWYLGIWYKNIPQRTYVWVANRDSPLRNLSSAEFKFD SSSIVVVSEDRTLWSSNGTGAVLDPVIQLLDTGNLVLRNGTNQILWQSFDHPVDTLLPDMKLGWNLETGFETYLNSWAEKDDPGTGKLSFKMNYSGFPEF FLIDGGRVDYRSGPWNGRRFSGVPEMQPLDYISFNFVTSEKEVYYSFQVSSSEIYSRLTVTPDGTLRRYTWIPDIGQWKPFWYAPKDQCDSYKECGNFGI CDSNASPVCKCTRGFRPRNPEAWELRDGSGGCARKTDLDCPRDKFLKLGNVKLPESNGGGTATFIIGISAGIGSLLILLTICLIWKRKNLSAFCQNTKHH KSHLERSQDSFLNEAAISSKRDNHYSGENNAAEEVVELPLFDFGTMAAATNNFSEDNKLGHGGFGVVYKGRMVDHYEGHGDVAVKRLSRSSGQGSEEFKN EVQLIAKLQHRNLVRLVGCCVEMDEKMLVYEYMENRSLDSIIFNRSKSNLLTWQRRFNILCGIARGLLYLHQDSRFRIIHRDLKASNILLDAEWTPKISD FGMARIFGTDQTEACTRRVVGTYGYMSPEYAMDGHFSVKSDVFSFGVLVIEIITGKKNRGFYLPNSELNLLGHCWKLWKGGQGLELVDEAIGSSYSACEA LRCIHVGLLCVQERAEDRPTMGSVLLMLSSETASLPTPKNPGFCLGRSPLETDSSSGKQDETFTVNQVTVTVLDAR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G65800		ARK2	receptor kinase 2 (.1)		Lus10007602 [exp]	0	1
AT3G25250		AtOXI1, OXI1, A...	oxidative signal-inducible1, A...		Lus10025882 [exp]	2.0	0.9385
AT3G59080			Eukaryotic aspartyl protease f...		Lus10007335 [exp]	5.7	0.9170
AT4G12070			unknown protein		Lus10031257 [exp]	6.5	0.8999
AT3G23250	MYB	ATMYB15, ATY19	myb domain protein 15 (.1.2)		Lus10003557 [exp]	7.7	0.9067
AT3G28345		MDR13, ABCB15	multi-drug resistance 13, ATP-...		Lus10005839 [exp]	9.4	0.8588
AT1G13190			RNA-binding (RRM/RBD/RNP motif...		Lus10039103 [exp]	17.7	0.8951
AT1G18390			Protein kinase superfamily pro...		Lus10029132 [exp]	21.3	0.8780
AT5G54650		ATFH5, Fh5	FORMIN HOMOLOGY 5, formin homo...		Lus10036609 [exp]	21.6	0.8757
					Lus10005523 [exp]	22.0	0.8355
AT1G58190		AtRLP9	receptor like protein 9 (.1.2)		Lus10002742 [exp]	32.1	0.8338

Compare expression of checked genes

Lus10007602 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.