Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G21380 918 / 0 ARK3 receptor kinase 3 (.1) AT1G65790 880 / 0 ARK1 receptor kinase 1 (.1) AT1G65800 853 / 0 ARK2 receptor kinase 2 (.1) AT4G27290 694 / 0 S-locus lectin protein kinase family protein (.1) AT1G11340 692 / 0 S-locus lectin protein kinase family protein (.1) AT1G11410 661 / 0 S-locus lectin protein kinase family protein (.1) AT4G21390 644 / 0 B120 S-locus lectin protein kinase family protein (.1) AT1G11330 632 / 0 S-locus lectin protein kinase family protein (.1.2) AT1G61610 627 / 0 S-locus lectin protein kinase family protein (.1) AT4G27300 613 / 0 S-locus lectin protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018405 [exp] 1380 / 0 AT4G21380 952 / 0.0 receptor kinase 3 (.1) Lus10014813 [exp] 729 / 0 AT4G27290 805 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10037732 [exp] 721 / 0 AT4G21380 768 / 0.0 receptor kinase 3 (.1) Lus10038552 [exp] 717 / 0 AT4G27290 879 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10016871 [exp] 712 / 0 AT4G27290 752 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10037729 [exp] 712 / 0 AT4G27290 750 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10016860 [exp] 702 / 0 AT4G21380 743 / 0.0 receptor kinase 3 (.1) Lus10038556 [exp] 699 / 0 AT4G21380 769 / 0.0 receptor kinase 3 (.1) Lus10006746 [exp] 693 / 0 AT1G11340 836 / 0.0 S-locus lectin protein kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G028000 [exp] 1077 / 0 AT4G21380 1020 / 0.0 receptor kinase 3 (.1) Potri.011G037100 [exp] 1050 / 0 AT4G21380 982 / 0.0 receptor kinase 3 (.1) Potri.001G414077 [exp] 779 / 0 AT4G27290 855 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.001G413800 [exp] 765 / 0 AT4G27290 991 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.001G412300 [exp] 763 / 0 AT4G27290 886 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.011G125050 [exp] 761 / 0 AT4G27290 870 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.001G409300 [exp] 758 / 0 AT4G27290 875 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.011G128800 [exp] 747 / 0 AT4G27290 856 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.001G411000 [exp] 743 / 0 AT4G27290 775 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.001G411100 [exp] 737 / 0 AT4G27290 746 / 0.0 S-locus lectin protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00954 [flax] [poplar] S_locus_glycop S-locus glycoprotein domain CL0016 [flax] [poplar] PKinase PF07714 [flax] [poplar] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase CL0016 [flax] [poplar] PF11883 [flax] [poplar] DUF3403 Domain of unknown function (DUF3403) CL0168 [flax] [poplar] PAN PF08276 [flax] [poplar] PAN_2 PAN-like domain CL0168 [flax] [poplar] PF01453 [flax] [poplar] B_lectin D-mannose binding lectin
Representative CDS sequence Show only first row Show all	>Lus10007603 pacid=23140313 polypeptide=Lus10007603 locus=Lus10007603.g ID=Lus10007603.BGIv1.0 annot-version=v1.0 ATGAAACCCCGCCAAAGAACCACAACAAAAGCACGTATCTTCTTCTTCTCCTTCATAATTCCCCTGTTCCCATTACTCTGCTCCGCCGCCGACATCCTCA CCGCCGCCCAATCCTTAATCAACAACCAGACCCTCATCTCCGCCGCCGGAGTCTTCGAGCTCGGATTCTTCACCCCGGCAGAATCTTCCGGCAACTGGTA CTTAGGTATCTGGTACAAAAACATCCCCCAACGAACCTACGTCTGGGTCGCCAATCGCGATTCCCCTCTCCGGAATCCTAACTCCGCCGAATTCAAAATC GACAGCAGCTCAATCGTTATCGTCAGTCAAGGCAGAACTCTATGGTCCTCGGACGGGACCGGAACGGTCTCGGACGCTGTTATTCAGCTGCTGGATACGG GAAATCTCGTTCTCAGGAACAAGACAAATCGGATTCTGTGGCAGAGCTTTGATCATCCGACGGACACTCTGCTTCCGGACATGAAAGTCGGGTGGAATCT GGAGACAGGATTCGAGACTTACATAAATTCATGGGCGGGGAAAGACGATCCAGGAACCGGGAAGCTGTCCTTCAGAATGAATTACTCCGGTTTCCCAGAG TTTTTTCTAATCAGCGGCGGGAGAGTCGATTACAGGAGCGGGCCGTGGAACGGCAAACGATTCAGCGGCGTGCCGGAAATGCAGCCGCTAGATCAAATCT TGTTCGACTTCGTGGCGTCGGAACAAGAAGTCTACTACTCGTTCCACGTGTCATCGTCGGATATCTACTCCCACCTGAGCGTCACTCCCGAAGGGACCCT CCAGCGGTCCACGTGGATCCCTGAAATTGGTCAGTGGAAGCCGTTTTGGTACGCTCCTAAAGACCAATGCGACGGCTATAAGGAGTGTGGCAACTTCGGG ATCTGTGATTCAAACGCCTCCCCTGTTTGTAAGTGTGTACGCGGGTTCCGCCCGATGAACCCGGAGGCGTGGAAGCTACGAGACGGGTCGGGCGGGTGTG CCCGGAAGACGGATTTGGACTGTCCGGCAGATAGGTTTTTTAAATTGGGGAATGTTAAGCTGCCGGAGAGTACGACGGCGGTGGTGGATCGGAGTGTTGG GTTGAAGGAGTGTGGGGAGAGGTGCGGAAGGGACTGTTCGTGTACGGCGTACGCTGCCGCGAATATCACCAGCGGCGGGTCGGGCTGCGTGATGTGGACC GGCGAGTTAATGGATATGCGGCAATTTGCGGCCGGGGGGCAGGATCTGTACGTCCGGTTGGCGGCTTCTGATATAGGCAACGATGGAGTCGCTTCGAGTT TGATCATCGGACTATCGGTCAGCATCGGATCTCTCCTCATACTCCTGATAATCTGCCTAATATGGAAACGAAAACAACACCAGAAAGCCCATCAAGACAG AAGCCATCAGCAGGAGGACTTCTTCCGGCTAAAGGAAGCAGCGATTTCAACCAACTCCCCGGGCGAAACCAACAAGGCCACGGAGGACACGGTGGAGCTG CCGTTGTTCGATTTCGGAACAATGGCAGCCGCCACCGACAACTTCTCCGAGTACAACAAGCTTGGACAAGGAGGGTTCGGAGTCGTTTACAAAGGTAAGA TGCAGGACCATCATTATGGAGTAGTTGCGGTGAAGAGGCTGTCGAAAAGTTCGGGGCAAGGAACGGAGGAGTTCAAGAACGAGGTCCAGCTGATTGCCAA ACTTCAGCACAGGAATCTTGTGAGGCTTGTTGGCTGTTGCGTTGAGATGGATGAGAAGATGTTGGTTTATGAGTACATGGAGAATCGAAGCTTGGACTCC ATCATTTTCTGTAGATCAAAGAGGAACTTGCTAACATGGGAAATGAGGTTCAACATAATATGTGGGATTGTTAGAGGGCTTTTATACTTGCACCAAGATT CGAGGCTCAGAATAATTCATAGAGATCTTAAAGTGAGCAACATTTTGCTCGACGGTGAATGGACTCCGAAGATATCCGATTTTGGTATGGCTAGGATATT CGGTAGCGATCAAACGGAAGCATGCACTAGAAGAGTAGTTGGAACATATGGTTACATGTCTCCAGAGTATGCAATGGACGGTCACTTCTCTGTGAAATCC GACGTTTTCAGTTTCGGAGTCCTAATGATAGAGATCGTCACGGGGAAGAAGAACAGTGGATTCTACCACTCGGACAGCGAGCTTAACCTCCTTGGACATT GTTGGAAGCTGTGGAAGGAAGGGCAAGGCCTGGAACTGGTGGATGCAGCAGTACTAGGAAGTTCATACTCAGCTTGTGAAGCTCTTAGGTGCATACATGT TGGGCTTTTGTGCGTACAGGAAAGAGCAGAGGACAGGCCCACAATGGGATCGGTGTTGTTGATGCTCAGCAGTGAAACGGCGTCGTTGCCTGCGCCGAGA ACGCCAGGGTTCTGCTGCCTTGATAGGAGCCCTTTGGAGACTGATTCTTCTTCTGGGAAACAGGGTGAAATTTTTACTGTTAACCAAGTTACAGTTACTA TGTTGGAAGCTCGGTAA
AA sequence Show only first row Show all	>Lus10007603 pacid=23140313 polypeptide=Lus10007603 locus=Lus10007603.g ID=Lus10007603.BGIv1.0 annot-version=v1.0 MKPRQRTTTKARIFFFSFIIPLFPLLCSAADILTAAQSLINNQTLISAAGVFELGFFTPAESSGNWYLGIWYKNIPQRTYVWVANRDSPLRNPNSAEFKI DSSSIVIVSQGRTLWSSDGTGTVSDAVIQLLDTGNLVLRNKTNRILWQSFDHPTDTLLPDMKVGWNLETGFETYINSWAGKDDPGTGKLSFRMNYSGFPE FFLISGGRVDYRSGPWNGKRFSGVPEMQPLDQILFDFVASEQEVYYSFHVSSSDIYSHLSVTPEGTLQRSTWIPEIGQWKPFWYAPKDQCDGYKECGNFG ICDSNASPVCKCVRGFRPMNPEAWKLRDGSGGCARKTDLDCPADRFFKLGNVKLPESTTAVVDRSVGLKECGERCGRDCSCTAYAAANITSGGSGCVMWT GELMDMRQFAAGGQDLYVRLAASDIGNDGVASSLIIGLSVSIGSLLILLIICLIWKRKQHQKAHQDRSHQQEDFFRLKEAAISTNSPGETNKATEDTVEL PLFDFGTMAAATDNFSEYNKLGQGGFGVVYKGKMQDHHYGVVAVKRLSKSSGQGTEEFKNEVQLIAKLQHRNLVRLVGCCVEMDEKMLVYEYMENRSLDS IIFCRSKRNLLTWEMRFNIICGIVRGLLYLHQDSRLRIIHRDLKVSNILLDGEWTPKISDFGMARIFGSDQTEACTRRVVGTYGYMSPEYAMDGHFSVKS DVFSFGVLMIEIVTGKKNSGFYHSDSELNLLGHCWKLWKEGQGLELVDAAVLGSSYSACEALRCIHVGLLCVQERAEDRPTMGSVLLMLSSETASLPAPR TPGFCCLDRSPLETDSSSGKQGEIFTVNQVTVTMLEAR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G21380		ARK3	receptor kinase 3 (.1)		Lus10007603 [exp]	0	1
AT5G17390			Adenine nucleotide alpha hydro...		Lus10007982 [exp]	8.5	0.6778
AT5G06060			NAD(P)-binding Rossmann-fold s...		Lus10024360 [exp]	11.8	0.6781
AT3G47570			Leucine-rich repeat protein ki...		Lus10030856 [exp]	11.9	0.6405
AT4G18360			Aldolase-type TIM barrel famil...		Lus10042495 [exp]	12.3	0.6336
AT4G22200		AKT3, AKT2/3	potassium transport 2/3 (.1)		Lus10003644 [exp]	16.1	0.6295
					Lus10039943 [exp]	22.4	0.5950
AT5G13530		KEG	KEEP ON GOING, protein kinases...		Lus10002621 [exp]	26.2	0.5846
AT4G02210			unknown protein		Lus10032996 [exp]	26.6	0.5874
AT2G20710			Tetratricopeptide repeat (TPR)...		Lus10005599 [exp]	29.2	0.5852
AT1G52780			Protein of unknown function (D...		Lus10033064 [exp]	32.0	0.6103

Compare expression of checked genes

Lus10007603 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.