Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G11340 679 / 0 S-locus lectin protein kinase family protein (.1) AT1G11410 655 / 0 S-locus lectin protein kinase family protein (.1) AT4G21380 637 / 0 ARK3 receptor kinase 3 (.1) AT1G65800 604 / 0 ARK2 receptor kinase 2 (.1) AT1G65790 591 / 0 ARK1 receptor kinase 1 (.1) AT1G61610 571 / 0 S-locus lectin protein kinase family protein (.1) AT1G11330 545 / 0 S-locus lectin protein kinase family protein (.1.2) AT4G21390 539 / 7e-180 B120 S-locus lectin protein kinase family protein (.1) AT1G11280 531 / 4e-177 S-locus lectin protein kinase family protein (.1.2.3.4) AT1G61500 515 / 3e-171 S-locus lectin protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007610 [exp] 1123 / 0 AT1G11410 693 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10013910 [exp] 1095 / 0 AT1G11340 628 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10030768 [exp] 944 / 0 AT1G11340 667 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10005136 [exp] 944 / 0 AT1G11340 471 / 2e-155 S-locus lectin protein kinase family protein (.1) Lus10034637 [exp] 937 / 0 AT1G11340 660 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10013246 [exp] 908 / 0 AT1G11340 678 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10013244 [exp] 905 / 0 AT1G11340 669 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10013245 [exp] 896 / 0 AT1G11300 955 / 0.0 protein serine/threonine kinases;protein kinases;ATP binding;sugar binding;kinases;carbohydrate binding (.1) Lus10030766 [exp] 892 / 0 AT1G11340 660 / 0.0 S-locus lectin protein kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G036600 [exp] 853 / 0 AT1G11340 741 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.011G036400 [exp] 845 / 0 AT1G11340 726 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.004G028300 [exp] 838 / 0 AT1G11340 742 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.011G035700 [exp] 830 / 0 AT1G11340 743 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.011G036100 [exp] 820 / 0 AT1G11340 719 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.011G035800 [exp] 820 / 0 AT1G11340 705 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.004G028701 [exp] 706 / 0 AT1G11340 899 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.004G028466 [exp] 687 / 0 AT1G11340 884 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.004G028600 [exp] 685 / 0 AT1G11340 875 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.011G035600 [exp] 678 / 0 AT4G21380 711 / 0.0 receptor kinase 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00954 [flax] [poplar] S_locus_glycop S-locus glycoprotein domain CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain CL0168 [flax] [poplar] PAN PF08276 [flax] [poplar] PAN_2 PAN-like domain CL0168 [flax] [poplar] PF01453 [flax] [poplar] B_lectin D-mannose binding lectin
Representative CDS sequence Show only first row Show all	>Lus10007604 pacid=23140306 polypeptide=Lus10007604 locus=Lus10007604.g ID=Lus10007604.BGIv1.0 annot-version=v1.0 ATGGATGCAACGAGGCTCGTTACGCTATCTATGCTGATCCTCTGCTACTACCAAACATGCTGCGGCCACAGCCGTACCAGGAGTCAATTTGTGAGAAGAG ACGGGAGCTTGATGATCTCAAAAGGTGGTAAGTTTGCTTTAGGGTTCTTCAGTCCTGGAAGTTCTAGCTATAGGTATCTTGGCATTTGGTACCACGGGAT GCCAAACAGGACTGTGGTTTGGGTAGCAAATAGGGACTATCCCATCGTTGGAAATTCAGGTGTTCTTTCGATTAGTCGTGGGAATTGCGATCTTAGTCTC CATAGTAATAGTAGCAGCAAGGTGCCTGTTTGGTTTGCTAATGTTCCGGATGGGGTGAATGGTTCGTGCGATGCTCGGCTGTTGGATACAGGGAATTTGG TGTTGGTGGGAGGGAGAAGTAAGAGGAATCCGAATATTGTGTGGCAAAGCTTTGATCATCCTACGGACACTTTACTACCGGGCATGAAAGTTGGGATGAA TCGAAGAACGGGTTCCTCTAAATTCTTGACGTCTTGGAGATCAGTGGATGATCCCGGAACGGGAGATTTCTCGTATAAGCTGAACCCTAATGGTTCGGCA CAGTTCTTTCTGTACCGAGGTGGCACTCCTTATTGGCGGAGCGTTCCATGGCCATGGGAAGGTTACCTTAGTTTTCTTAAGGATTCTTTTGTGAACAATG AGGATGGAATATACTACTCAAATACATTAGTTAACTCTACTGTTCAGGTGCGGGTGGTCATCGATCATTCGGGTTTGTTCGAGTCGATGACTTGGGACGA AGATGTCGGCCAGTGGAACGTATTTTATTCATCACCAAAGCAGAAGTGTGATTTCTATGGAACTTGTGGTCCTAATGCCAAGTGTTACGCTAGCATTATC TTCCCTTATGAATGTGAGTGTTTACCTGGTTATGAACCTAGATACCCTAAAAAATGGAGGCTAAGAGATAGGTCTGGCGGGTGTGTAAGAAAGCGGGCGG AATCTTCTTCGGTATGTGGGGGTGGTGAAGGGTTTGTGAGAGTGGAGAAAGTGAAGATTCCTGATGCTTCAACAGCAATATGGATGGACGTCGGTACCGA TAAACTGAAATGTGAAGCTGAATGCAGGAAGAACTGTGCATGCTCTGCATATGCTACCATTGATATCGTTGGGAAAGGGACTTGTTGCTGGACATGGCGT GGAGAGCTGATGGATACGGTACACATACCGGTCAATGCGTATGATCTATACGTTCGTGTTGATGCTCTTGAACTAGCTGATTATCTGAAGGATTCCAATG GATTTGTGGAGCTGAGGTTGAAGTTGAGCATTATTGTACCGTCCGTTGTCTCAGTGTGGATTGTCATCGTCTTGCTTGCCTATCTGTGGATCAGGAAGTG GAAACGGAAGAGAGTGAAGAACAGACAGATCAGAAATTTTTTCCAACCAACTGATAGTTCAAATAGCTTGGAAGATCATTTGGCAACAAGAGACATCAAG CGAAGTAGTATATACCCAGAATTACCGTTTTTCAGCCTTGGCACCATACATGAAGCTACTGACGGTTTTTCTTCCGAAAATAAAATCGGACAAGGGGGTT TTGGTTCGGTGTACAAGGGTAAGCTGTCAAGCGGGCATGAGGTTGCTGTGAAACGAATGTCGAAAAATTCAAGGGAGGGGTTAGAACAACTTAAGAACGA GGTGTTTTTAATAGCAAAGCTCCAGCATAGAAACCTTGTGAAGCTTCATGGCTGCTGCATCGAGGAAGATGAACAAATGTTGGTTTACGAATACTTGCCT TACAATAGTTTGGATTCACTTCTTTTTGTTGATTGGAAGCAAAGATCTTTCTTAGATTGGAGGAAACGGTTCGATATAATCGAGGGTATTGCTCGTGGGA TCTTGTATCTTCATCAGGATTCGAGGTTCAGGATCATCCATAGAGATCTGAAACCCAGCAATATCCTCCTGGATGCTGAACTGAACCCCAAAATCTCCGA TTTCGGGATGGCTAGAATCCTGGACAGCGGTCAGATTGATGGGAAGACGAGCAAAGTTTGCGGAACTTACGGCTACATGCCCCCGGAGTATGCAGTTTTT GGAAGGTATTCGGTGAAATCGGATGTGTTCAGCTTCGGTGTAATATTACTTGAAACAGTCACAGGGAAGAAGATCAACGGGTTCTGCTTCCAGGACGATC CTTCCTTGACCTTAATCGGCCACGTGTGGGAGCTATGGAGGGCCGGCAGAGCAAATGAGGCGTTCGATTCGTCCATGTCGATCAAGGACACGAGCGAGGT GCTTAGGTGCATCAAAATTGGACTCGTATGTGTGGAGGAAAACGCAGAAGACCGGCCTGATATGCTGGCGGTCGTTCTTATGTTGAATAGCGTAACCACT CCGGTTCCTTCTCCGCAGAAACCTGCATTTGTTGCTTCCGTGAATCCCAAGCTACTGTTGAGTAAAGAACATACTTGTTCCATTAACGAGATGTCCTTCT CAGGGATCCTCAGTCGCTGA
AA sequence Show only first row Show all	>Lus10007604 pacid=23140306 polypeptide=Lus10007604 locus=Lus10007604.g ID=Lus10007604.BGIv1.0 annot-version=v1.0 MDATRLVTLSMLILCYYQTCCGHSRTRSQFVRRDGSLMISKGGKFALGFFSPGSSSYRYLGIWYHGMPNRTVVWVANRDYPIVGNSGVLSISRGNCDLSL HSNSSSKVPVWFANVPDGVNGSCDARLLDTGNLVLVGGRSKRNPNIVWQSFDHPTDTLLPGMKVGMNRRTGSSKFLTSWRSVDDPGTGDFSYKLNPNGSA QFFLYRGGTPYWRSVPWPWEGYLSFLKDSFVNNEDGIYYSNTLVNSTVQVRVVIDHSGLFESMTWDEDVGQWNVFYSSPKQKCDFYGTCGPNAKCYASII FPYECECLPGYEPRYPKKWRLRDRSGGCVRKRAESSSVCGGGEGFVRVEKVKIPDASTAIWMDVGTDKLKCEAECRKNCACSAYATIDIVGKGTCCWTWR GELMDTVHIPVNAYDLYVRVDALELADYLKDSNGFVELRLKLSIIVPSVVSVWIVIVLLAYLWIRKWKRKRVKNRQIRNFFQPTDSSNSLEDHLATRDIK RSSIYPELPFFSLGTIHEATDGFSSENKIGQGGFGSVYKGKLSSGHEVAVKRMSKNSREGLEQLKNEVFLIAKLQHRNLVKLHGCCIEEDEQMLVYEYLP YNSLDSLLFVDWKQRSFLDWRKRFDIIEGIARGILYLHQDSRFRIIHRDLKPSNILLDAELNPKISDFGMARILDSGQIDGKTSKVCGTYGYMPPEYAVF GRYSVKSDVFSFGVILLETVTGKKINGFCFQDDPSLTLIGHVWELWRAGRANEAFDSSMSIKDTSEVLRCIKIGLVCVEENAEDRPDMLAVVLMLNSVTT PVPSPQKPAFVASVNPKLLLSKEHTCSINEMSFSGILSR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G11340			S-locus lectin protein kinase ...		Lus10007604 [exp]	0	1
AT2G21620		RD2	Adenine nucleotide alpha hydro...		Lus10042316 [exp]	1.7	0.9498
AT5G64260		EXL2, MSJ1.10	EXORDIUM like 2 (.1)		Lus10010352 [exp]	4.2	0.9140
AT1G21000			PLATZ transcription factor fam...		Lus10023411 [exp]	5.7	0.9136
AT4G37670		NAGS2	N-acetyl-l-glutamate synthase ...		Lus10019262 [exp]	6.5	0.9280
AT1G55850		ATCSLE1	cellulose synthase like E1 (.1...		Lus10016625 [exp]	7.1	0.9312
AT2G39650			Protein of unknown function (D...		Lus10023412 [exp]	9.2	0.8998
AT5G53130		ATCNGC1, CNGC1	CYCLIC NUCLEOTIDE-GATED CHANNE...		Lus10014925 [exp]	9.5	0.8918
AT2G47130		AtSDR3	short-chain dehydrogenase/redu...		Lus10042181 [exp]	10.2	0.9272
AT5G53130		ATCNGC1, CNGC1	CYCLIC NUCLEOTIDE-GATED CHANNE...		Lus10038815 [exp]	13.0	0.8765
AT5G40780		LHT1, LTH1	lysine histidine transporter 1...		Lus10022329 [exp]	16.4	0.9140

Compare expression of checked genes

Lus10007604 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.