Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002585 [exp] 71 / 2e-16 AT4G20340 42 / 3e-05 Transcription factor TFIIE, alpha subunit (.1)
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10007605 pacid=23140317 polypeptide=Lus10007605 locus=Lus10007605.g ID=Lus10007605.BGIv1.0 annot-version=v1.0 ATGGGTCCCTTATACCAACTTGCACCCATTTTACAACGCCCTAGGCGGTATGCTGCTAGCAAGTTAGGCCAGGTTATGTACGCAAGTATTCTTCAGGATT CGCGTGAGAAGCTGGCAATGCATAGGGATCCTCTTGTACAGAAGATCATTAGGTGCAGAAGCGGAGTTCGGGAACATATGTGCTTAGACTGTGAAATACG CTTTGATTCCTATGATGTTGCGGTTTTGGGGATGGCGAACGTTTCGATTCTCGAATGTCCACGTTGCTCTTCTATAAATCTTGCTGTCGTTGAGTTGGAG ACGTTGGAGGCTGACCGGAGGGTGTTTGACCAACTCCATCAATTGGTCACTGAGGTTGATCTGTTGCAGCAGCTTCCCAGTTTTGAAGATGAGGACCAGT TTTGGATAGAGATGATGGTGTTGGACGCTCTCCAAGATTAA
AA sequence Show only first row Show all	>Lus10007605 pacid=23140317 polypeptide=Lus10007605 locus=Lus10007605.g ID=Lus10007605.BGIv1.0 annot-version=v1.0 MGPLYQLAPILQRPRRYAASKLGQVMYASILQDSREKLAMHRDPLVQKIIRCRSGVREHMCLDCEIRFDSYDVAVLGMANVSILECPRCSSINLAVVELE TLEADRRVFDQLHQLVTEVDLLQQLPSFEDEDQFWIEMMVLDALQD

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10007605 [exp]	0	1
AT4G39490		CYP96A10	"cytochrome P450, family 96, s...		Lus10035234 [exp]	1.4	0.7645
AT1G32910			HXXXD-type acyl-transferase fa...		Lus10006333 [exp]	2.0	0.7578
AT1G22900			Disease resistance-responsive ...		Lus10021083 [exp]	3.0	0.7123
AT5G09360		LAC14	laccase 14 (.1)		Lus10036070 [exp]	10.8	0.7111
AT4G02050		STP7	sugar transporter protein 7 (....		Lus10008372 [exp]	12.0	0.7111
AT5G67360		ARA12	Subtilase family protein (.1)		Lus10008919 [exp]	13.2	0.7111
AT2G26490			Transducin/WD40 repeat-like su...		Lus10016289 [exp]	14.2	0.7111
AT3G18080		BGLU44	B-S glucosidase 44 (.1)		Lus10017997 [exp]	15.2	0.7111
AT1G08080		ATACA7, ACA7	A. THALIANA ALPHA CARBONIC ANH...		Lus10021456 [exp]	17.0	0.7069
AT1G55790			Domain of unknown function (DU...		Lus10032900 [exp]	17.9	0.6981

Compare expression of checked genes

Lus10007605 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.