Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G47790 66 / 3e-12 F-box and associated interaction domains-containing protein (.1) AT1G50870 58 / 2e-09 F-box and associated interaction domains-containing protein (.1) AT4G19940 57 / 3e-09 F-box and associated interaction domains-containing protein (.1) AT4G38870 57 / 3e-09 F-box and associated interaction domains-containing protein (.1) AT4G19930 55 / 2e-08 F-box and associated interaction domains-containing protein (.1) AT3G10240 50 / 8e-07 F-box and associated interaction domains-containing protein (.1) AT1G47765 50 / 9e-07 F-box and associated interaction domains-containing protein (.1) AT1G33530 50 / 9e-07 F-box family protein (.1) AT1G47730 50 / 1e-06 F-box and associated interaction domains-containing protein (.1) AT1G32420 49 / 2e-06 F-box and associated interaction domains-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007285 [exp] 291 / 1e-96 AT3G04660 82 / 7e-17 F-box and associated interaction domains-containing protein (.1) Lus10007277 [exp] 291 / 1e-96 AT3G04660 82 / 6e-17 F-box and associated interaction domains-containing protein (.1) Lus10011210 [exp] 219 / 4e-68 AT1G32420 87 / 7e-19 F-box and associated interaction domains-containing protein (.1) Lus10013934 [exp] 215 / 1e-66 AT1G11270 72 / 7e-14 F-box and associated interaction domains-containing protein (.1.2.3) Lus10011200 [exp] 196 / 3e-61 AT1G47790 84 / 2e-18 F-box and associated interaction domains-containing protein (.1) Lus10011190 [exp] 199 / 5e-60 AT1G32420 78 / 1e-15 F-box and associated interaction domains-containing protein (.1) Lus10011197 [exp] 195 / 2e-58 AT1G47790 86 / 6e-18 F-box and associated interaction domains-containing protein (.1) Lus10016866 [exp] 195 / 2e-57 AT1G32420 84 / 2e-17 F-box and associated interaction domains-containing protein (.1) Lus10026616 [exp] 184 / 1e-56 AT1G47790 77 / 1e-15 F-box and associated interaction domains-containing protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G458400 [exp] 72 / 7e-14 AT2G31470 113 / 8e-28 DROUGHT TOLERANCE REPRESSOR, F-box and associated interaction domains-containing protein (.1) Potri.002G223000 [exp] 61 / 3e-10 AT3G07870 467 / 5e-164 F-box and associated interaction domains-containing protein (.1) Potri.001G035500 [exp] 59 / 1e-09 AT4G12560 271 / 3e-87 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Potri.014G162600 [exp] 58 / 3e-09 AT3G07870 467 / 9e-164 F-box and associated interaction domains-containing protein (.1) Potri.017G058000 [exp] 55 / 2e-08 AT3G06240 138 / 5e-37 F-box family protein (.1) Potri.007G074084 [exp] 55 / 2e-08 AT1G11270 83 / 1e-17 F-box and associated interaction domains-containing protein (.1.2.3) Potri.008G215901 [exp] 54 / 4e-08 AT3G07870 103 / 3e-24 F-box and associated interaction domains-containing protein (.1) Potri.008G144000 [exp] 54 / 4e-08 AT4G38870 97 / 6e-22 F-box and associated interaction domains-containing protein (.1) Potri.008G215800 [exp] 51 / 3e-07 AT3G07870 101 / 3e-23 F-box and associated interaction domains-containing protein (.1) Potri.008G216000 [exp] 47 / 8e-06 AT1G47340 65 / 9e-12 F-box and associated interaction domains-containing protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10007606 pacid=23140331 polypeptide=Lus10007606 locus=Lus10007606.g ID=Lus10007606.BGIv1.0 annot-version=v1.0 ATGGAAGAAGAGAATTACAGAATGGGTGATCGATTCGATTCGAATAAAGGAACAACTAGAAACCCAGATTTCAGTATGAAACATTATGTTGGGAAAAGTG AAGCTACGAATGAGAAGAGGAGGAAGAGGATGGAGGAAGAGGAGGAGGAGCAGAAGAAGAAGAAGACAACGACAAAGATGGTCACATATGAGAAGTATTT TAGAATGAAAGCTCATGGTAGGACAACAAATAAGAACTATTTTCATGACGATCTGGTAGCTAGCGAGATACTTAGCAGACTCCCAGCCAAGTCACTTATG CGGTTCAAGTCAGCCTGTAAAGGCTGGAAATCCTTTACCGAACAAGATTCGTACTTTATCAATTTACACCGCATCCGTTCACTAGCACGCCCTCCGCGTT TGGTGACTATCGTCCGCAATTTTATACAAGAAGAAAAAGACAAAAGGAATGTTTCTGTTGATTTATTTTCAGTCGATCTAGACTGTGCCGATGGTGGTGG AGATGATGTCAGAAGAACCATTGTTCAGAGCGTAACGAGCTTCGGAACTCCAAGTGCTCCACGTTTTGCACTTTTGGGACCTGTTAGGGGATTGCTCTGT TTTGTTAACTTGGTCAACTGGGATGTAATGATTTACAATGTCAGCACCGGACAAGTTGTCACACCATGGTGCTCATCTGCGGTCTGGAGGGGTCAAAAGC GTTCCTCTACATCACCAATACCGGCATTTGAATTCGGATTTGACCCCAATACGGGAGAACATAAAATTATCTTCATATGGCGTGGTTCTCCTACAACAAC AGCTTGTTGTGAGGTGTTGACGGTAGGCGTCGACTCTAGTTGGAGAATAATCGATGCTGTCCTTCCTTGA
AA sequence Show only first row Show all	>Lus10007606 pacid=23140331 polypeptide=Lus10007606 locus=Lus10007606.g ID=Lus10007606.BGIv1.0 annot-version=v1.0 MEEENYRMGDRFDSNKGTTRNPDFSMKHYVGKSEATNEKRRKRMEEEEEEQKKKKTTTKMVTYEKYFRMKAHGRTTNKNYFHDDLVASEILSRLPAKSLM RFKSACKGWKSFTEQDSYFINLHRIRSLARPPRLVTIVRNFIQEEKDKRNVSVDLFSVDLDCADGGGDDVRRTIVQSVTSFGTPSAPRFALLGPVRGLLC FVNLVNWDVMIYNVSTGQVVTPWCSSAVWRGQKRSSTSPIPAFEFGFDPNTGEHKIIFIWRGSPTTTACCEVLTVGVDSSWRIIDAVLP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G47790			F-box and associated interacti...		Lus10007606 [exp]	0	1
AT3G23610		DSPTP1	dual specificity protein phosp...		Lus10041227 [exp]	8.8	0.7407
AT5G39670			Calcium-binding EF-hand family...		Lus10042369 [exp]	11.4	0.7702
AT1G28220		ATPUP3	purine permease 3 (.1)		Lus10036465 [exp]	12.6	0.7688
AT5G06060			NAD(P)-binding Rossmann-fold s...		Lus10016497 [exp]	18.4	0.7591
AT2G46080			unknown protein		Lus10018821 [exp]	19.4	0.7498
AT5G58380		PKS2, CIPK10, S...	SNF1-RELATED PROTEIN KINASE 3....		Lus10022749 [exp]	23.3	0.7663
AT1G35190			2-oxoglutarate (2OG) and Fe(II...		Lus10012963 [exp]	25.6	0.6943
AT4G33780			unknown protein		Lus10037250 [exp]	25.8	0.7650
AT3G48240			Octicosapeptide/Phox/Bem1p fam...		Lus10019490 [exp]	26.5	0.7377
AT2G17080			Arabidopsis protein of unknown...		Lus10012368 [exp]	36.1	0.7406

Compare expression of checked genes

Lus10007606 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.