Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G50410 215 / 2e-68 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017246 [exp] 446 / 8e-155 AT5G50410 186 / 7e-55 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G097500 [exp] 252 / 1e-82 AT5G50410 232 / 2e-76 unknown protein Potri.015G096000 [exp] 248 / 5e-81 AT5G50410 239 / 2e-79 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10007607 pacid=23140310 polypeptide=Lus10007607 locus=Lus10007607.g ID=Lus10007607.BGIv1.0 annot-version=v1.0 ATGGTGGAGTACAGTGAGCAAACGTTTATTACCTATACTCCAGATACCAAAATGGAATATTTACTTAATAGTTCATACCCTAAAATCAAAGCTCCGATTT TGATAACAATGCTCTCTGCCGGTATGGCGACGGTGGTGAACACAGCGGAAGAGCAGCAACAACAGCAGGCTGATGGCAGTAGTAGTAATGTGGATAAAAA TCCGAACCAGTCTCAAGTATGGTTGACAATGGCGCAAGCTTGGCTGACTGCATTCCCAGACGCCAAGGCTGTGAGTACAGCAGATGTCGAGTCTTGGATC GACTCCAATTTCACGTCTTTACCAGCTGATCTTCAGTCTATGCCTCGATCGGAGATCATCGATCGCCTCCTTTCGATTCAGAACTACATGCGCCCCTCTT CTCAATCTCAGCCGGCGGGAACAGAGGAGAATCAGGTGGACGATACAAGTGATATTCCGAGCTACCGGTTTCAACGAACCGATCAATGGCGGCCGGTTTA TTCGTGGTTGGAGACCTTAGATAACGAAGAAGTGGTTACGTCCAACAAAATCTACGACTGGCTGGAATCGAACCCTGGTATCAAAGAAGACTTGCATTCC AGACACTCCAAATACCATTTGATGCACTACATCAAGAAATGCCATGTCAAGATACTGAAGAAGAGGGAGAAGAAGAAGAAGCAGGCGGAGCAACCGAGCT TATCGCCTAGTCGAGCGCGAAAGAGTGTTATGGAGATGAAGGAACCATCACCATTACCAAGCAAACAGTTGATGAAGATACCGAAGGATAGCGACTTGTA TACAGCGAAACGAAACGAAGCGGTTCAGAAATATGAGATTCTTCATTCATTCCAGCTTGCTAGAGTTGGAGAAGAAGCTTATGCCTCACTTTTCAAAGCG TCAAAAGCTGCAATGAAGGAAGTCTACAATGCGGTTCGGAGAAAGGAGTTAGACCTGACTGAATTTGGAGATTTTATTAGCCGATGTAGGCATCTGACCG GTCCAAATCTCGATCTTCGTTGTGCTAGGAATGAGGCTGCTCATGTACTTGCTAGGCAGTCGCACTCTTCGAGTTGA
AA sequence Show only first row Show all	>Lus10007607 pacid=23140310 polypeptide=Lus10007607 locus=Lus10007607.g ID=Lus10007607.BGIv1.0 annot-version=v1.0 MVEYSEQTFITYTPDTKMEYLLNSSYPKIKAPILITMLSAGMATVVNTAEEQQQQQADGSSSNVDKNPNQSQVWLTMAQAWLTAFPDAKAVSTADVESWI DSNFTSLPADLQSMPRSEIIDRLLSIQNYMRPSSQSQPAGTEENQVDDTSDIPSYRFQRTDQWRPVYSWLETLDNEEVVTSNKIYDWLESNPGIKEDLHS RHSKYHLMHYIKKCHVKILKKREKKKKQAEQPSLSPSRARKSVMEMKEPSPLPSKQLMKIPKDSDLYTAKRNEAVQKYEILHSFQLARVGEEAYASLFKA SKAAMKEVYNAVRRKELDLTEFGDFISRCRHLTGPNLDLRCARNEAAHVLARQSHSSS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G50410			unknown protein		Lus10007607 [exp]	0	1
AT3G12480	CCAAT	NF-YC11	"nuclear factor Y, subunit C11...		Lus10026118 [exp]	13.5	0.7310
AT3G53730			Histone superfamily protein (....		Lus10005896 [exp]	14.2	0.7716
AT5G35520		MIS12, ATMIS12	MIS12 HOMOLOGUE, ARABIDOPSIS M...		Lus10009652 [exp]	20.6	0.7697
AT3G45980		H2B, HTB9	HISTONE H2B, Histone superfami...		Lus10040855 [exp]	21.4	0.7685
AT3G27430		PBB1	N-terminal nucleophile aminohy...		Lus10032102 [exp]	27.9	0.7390
AT4G32790			Exostosin family protein (.1)		Lus10011120 [exp]	32.0	0.6697
AT2G02130		PDF2.3, LCR68	low-molecular-weight cysteine-...		Lus10029544 [exp]	32.1	0.7606
AT5G66140		PAD2	proteasome alpha subunit D2 (....		Lus10041890 [exp]	39.5	0.7157
AT1G53330			Pentatricopeptide repeat (PPR)...		Lus10036019 [exp]	39.7	0.7402
AT3G17430			Nucleotide-sugar transporter f...		Lus10018339 [exp]	42.4	0.7013

Compare expression of checked genes

Lus10007607 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.