Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G61610 123 / 3e-32 S-locus lectin protein kinase family protein (.1) AT4G21390 119 / 8e-31 B120 S-locus lectin protein kinase family protein (.1) AT4G27300 119 / 1e-30 S-locus lectin protein kinase family protein (.1) AT1G61440 118 / 2e-30 S-locus lectin protein kinase family protein (.1) AT1G11410 118 / 2e-30 S-locus lectin protein kinase family protein (.1) AT1G61500 117 / 3e-30 S-locus lectin protein kinase family protein (.1) AT4G27290 117 / 4e-30 S-locus lectin protein kinase family protein (.1) AT1G11340 117 / 4e-30 S-locus lectin protein kinase family protein (.1) AT1G61490 117 / 6e-30 S-locus lectin protein kinase family protein (.1) AT1G61480 116 / 1e-29 S-locus lectin protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017247 [exp] 293 / 6e-95 AT1G11340 503 / 2e-166 S-locus lectin protein kinase family protein (.1) Lus10018402 [exp] 293 / 5e-94 AT1G11340 691 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10005136 [exp] 200 / 2e-60 AT1G11340 471 / 2e-155 S-locus lectin protein kinase family protein (.1) Lus10025512 [exp] 179 / 5e-52 AT1G11340 530 / 5e-177 S-locus lectin protein kinase family protein (.1) Lus10007604 [exp] 179 / 1e-51 AT1G11340 694 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10007610 [exp] 175 / 2e-50 AT1G11410 693 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10030766 [exp] 170 / 1e-48 AT1G11340 660 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10005053 [exp] 168 / 2e-48 AT1G11410 299 / 1e-90 S-locus lectin protein kinase family protein (.1) Lus10013910 [exp] 167 / 2e-47 AT1G11340 628 / 0.0 S-locus lectin protein kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G036100 [exp] 135 / 3e-36 AT1G11340 719 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.011G035700 [exp] 132 / 2e-35 AT1G11340 743 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.004G028300 [exp] 129 / 2e-34 AT1G11340 742 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.011G036466 [exp] 125 / 3e-34 AT1G11340 411 / 1e-136 S-locus lectin protein kinase family protein (.1) Potri.011G035850 [exp] 120 / 2e-32 AT4G23270 397 / 6e-134 cysteine-rich RLK (RECEPTOR-like protein kinase) 19 (.1) Potri.011G036400 [exp] 123 / 4e-32 AT1G11340 726 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.011G035600 [exp] 122 / 9e-32 AT4G21380 711 / 0.0 receptor kinase 3 (.1) Potri.011G125601 [exp] 121 / 2e-31 AT4G27290 914 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.001G409300 [exp] 120 / 2e-31 AT4G27290 875 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.010G018600 [exp] 120 / 4e-31 AT4G27290 853 / 0.0 S-locus lectin protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF07714 [flax] [poplar] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Lus10007608 pacid=23140305 polypeptide=Lus10007608 locus=Lus10007608.g ID=Lus10007608.BGIv1.0 annot-version=v1.0 ATGCCCATGGACCTTCTTCTTATTCTCCCGCCATTTCTTTTCTTCATCATCCTGTTCTGCTCTCCCGCCGCCGCTTCGAACGACACATTAACTCAATTCC AGTCTCTCACCGACGGCGAACTTCTCGTCTCCACTAATTATCGAGATGGATCGAACAAGTTTCTCGAGTTGAAGCTGAAACTGAGCATTGTGCTGCCCTC CATTGCTGCATTATGGCTTGTTCTTATCCTGCTAGGCTTCTTCTGGCTAAGGAGGTGGCGAAGCAGGACAGTGAAGAAAAGAAGGATCAGAGATTTGTTC CACCCGAACCACAGTTCGAACCGGTTAAAAAACAACGGGATGTCGAGTGAGGAGATGGGTGGGACCTCAGTCTACCCAGAGCTGCCTTTCTTTAGTCTCA ACACTATCCGGGCTGCTACCGAAGATTTTGCCCCTGCTAACCAGCTCGGACGGGGAGGGTTCGGGTCCGTGTACAAGGGGAGGCTGCCAAATGGACAACA GGTTGCTGTGAAGCGGCTGAGCGAAAATTCGAGGCAAGGGCTCGAGCAGTTCAGGAACGAAGTACTACTTATCGCGAAGCTGCAACATCGGAATCTCGTT AAGCTCCATGGGTGCTGCGTTGAAGAAGAATCCATGGATGCTGCGTTGAAGAAGAAGAACAAATGCTGA
AA sequence Show only first row Show all	>Lus10007608 pacid=23140305 polypeptide=Lus10007608 locus=Lus10007608.g ID=Lus10007608.BGIv1.0 annot-version=v1.0 MPMDLLLILPPFLFFIILFCSPAAASNDTLTQFQSLTDGELLVSTNYRDGSNKFLELKLKLSIVLPSIAALWLVLILLGFFWLRRWRSRTVKKRRIRDLF HPNHSSNRLKNNGMSSEEMGGTSVYPELPFFSLNTIRAATEDFAPANQLGRGGFGSVYKGRLPNGQQVAVKRLSENSRQGLEQFRNEVLLIAKLQHRNLV KLHGCCVEEESMDAALKKKNKC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G11410			S-locus lectin protein kinase ...		Lus10007608 [exp]	0	1
AT5G51070		SAG15, CLPD, ER...	SENESCENCE ASSOCIATED GENE 15,...		Lus10012953 [exp]	1.7	0.9235
AT1G55520		ATTBP2, TBP2	A. THALIANA TATA BINDING PROTE...		Lus10017716 [exp]	4.5	0.8363
					Lus10038978 [exp]	5.5	0.9049
AT4G16295		SPH1	S-protein homologue 1 (.1)		Lus10029377 [exp]	5.8	0.9153
AT3G25160			ER lumen protein retaining rec...		Lus10038198 [exp]	8.4	0.8452
					Lus10016957 [exp]	9.8	0.7134
AT2G15480		UGT73B5	UDP-glucosyl transferase 73B5 ...		Lus10026926 [exp]	10.5	0.8724
AT1G71530			Protein kinase superfamily pro...		Lus10009464 [exp]	10.8	0.7852
AT4G37390		AUR3, YDK1, GH3...	YADOKARI 1, AUXIN UPREGULATED ...		Lus10014869 [exp]	11.8	0.8755
AT5G37060		ATCHX24	cation/H+ exchanger 24, ARABID...		Lus10031852 [exp]	12.4	0.8666

Compare expression of checked genes

Lus10007608 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.