Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G11340 687 / 0 S-locus lectin protein kinase family protein (.1) AT1G11410 686 / 0 S-locus lectin protein kinase family protein (.1) AT4G21380 643 / 0 ARK3 receptor kinase 3 (.1) AT1G65800 618 / 0 ARK2 receptor kinase 2 (.1) AT1G65790 610 / 0 ARK1 receptor kinase 1 (.1) AT4G27290 573 / 0 S-locus lectin protein kinase family protein (.1) AT1G61610 566 / 0 S-locus lectin protein kinase family protein (.1) AT1G11330 556 / 0 S-locus lectin protein kinase family protein (.1.2) AT4G21390 543 / 0 B120 S-locus lectin protein kinase family protein (.1) AT1G61380 522 / 9e-174 SD1-29 S-domain-1 29 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013910 [exp] 1180 / 0 AT1G11340 628 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10007604 [exp] 1139 / 0 AT1G11340 694 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10034637 [exp] 908 / 0 AT1G11340 660 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10030768 [exp] 900 / 0 AT1G11340 667 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10013246 [exp] 885 / 0 AT1G11340 678 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10030766 [exp] 882 / 0 AT1G11340 660 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10013245 [exp] 881 / 0 AT1G11300 955 / 0.0 protein serine/threonine kinases;protein kinases;ATP binding;sugar binding;kinases;carbohydrate binding (.1) Lus10030767 [exp] 874 / 0 AT1G11340 670 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10005136 [exp] 865 / 0 AT1G11340 471 / 2e-155 S-locus lectin protein kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G036600 [exp] 823 / 0 AT1G11340 741 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.011G036400 [exp] 821 / 0 AT1G11340 726 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.011G036100 [exp] 812 / 0 AT1G11340 719 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.011G035800 [exp] 803 / 0 AT1G11340 705 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.004G028300 [exp] 801 / 0 AT1G11340 742 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.011G035700 [exp] 788 / 0 AT1G11340 743 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.004G028701 [exp] 724 / 0 AT1G11340 899 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.004G028466 [exp] 703 / 0 AT1G11340 884 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.004G028600 [exp] 702 / 0 AT1G11340 875 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.011G035600 [exp] 663 / 0 AT4G21380 711 / 0.0 receptor kinase 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00954 [flax] [poplar] S_locus_glycop S-locus glycoprotein domain CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain CL0168 [flax] [poplar] PAN PF08276 [flax] [poplar] PAN_2 PAN-like domain CL0168 [flax] [poplar] PF01453 [flax] [poplar] B_lectin D-mannose binding lectin
Representative CDS sequence Show only first row Show all	>Lus10007610 pacid=23140337 polypeptide=Lus10007610 locus=Lus10007610.g ID=Lus10007610.BGIv1.0 annot-version=v1.0 ATGGAGACTGTAAATCTTGTGCTACTTTCTCTGGTTATCCTATTCCACAGAACGAGCTCTACTACCTCACTTGGCAGTACTATTTCTGCAAACCAATCCT TGACAGATGGCAGCACGGTGGTTTCAGAAGGTGGTAAGTTTGCTTTGGGGTTTTTCAGTCGTGGAAGTTCCAGCTATAGGTATCTTGGCATCTGGTACAA TGAGATACCTGAAAGAACTGTGGTTTGGGTAGCCAACAGGGACCATCCTATAGCTGGAAACTCAGGGTTTCTTTTGAATCATGAAAGCTGCAATCTTTTT CTCTATAGTAATAGCAGCAGCAGTAGCAGCAACCTTCCAGTGTGGTCTGCTAATGTTTCGTCGGGGCTGCACGGCCCTTGCTTGGCTCAGCTGCTCGATT CGGGGAATTTTGTATTGATGGCAGGAGGAGGTAAGAGTTGGAGGAATTCTGTCTGGGAAAGTTTTGAACATCCTACAGACACCTCACTACCAGGCATGAA ACTTGGGATGAGCAGGAGAACTGGTGTAAACCGGTTCTTGACATCATGGAGATCAGAGGACAACCCTGGTACAGGCACATTCACATATAAGCTTAACCCG AGTGGTTCGCCGCAGTTCTTTCTATACAAAGGTGTGAGTCCTTATTGGCGGGGCGTTCCCTGGCCATGGGGAATTCTTGGTTTCTTGAATACCACTTTTG AAACCAATGAAGATGGGATATACTATTCGGATATGTATATGAACTATTCTACTTACGGGAGGTTGGTCATTCGTCCTTCTGGTTTGTTGAATATGATGAT GTGGGACGGAGGTGAGGGACAGTGGAAGGTGATATTCTCTTCACCAAAGCATGAGTGTGATTTTTATGGAAGTTGTGGACCTTTTGCTAAGTGCTATTCC AGCATTGTCTTCCCTTATGAATGTGATTGCTTACCTGGTTATGAACCGAGATACCCTCGAAAATGGGAGGCAAGAGATAAGTCTGGTGGTTGTGTAAGAA AGCGATCAGAGTTGTCTTCTATCTGTGGAGGTGGAGAAGGGTTTGTGAGAGTGGAGAAAGTTAAGATACCTGATGCTTCAACAGCGGTGTCGATGGATGA AGCTGGAGTGAGTAAATCGAAATGCGAAGATAAATGCAGGAAGAACTGTTCGTGCTCTGCGTATGCTACCATTAATATCAATGGGAAAAGGACTTCTTGT TGGACTTGGTACGGAGATCTGATAGATACAGTACACCTGGCGGTCGATGCTTACGATCTCTACGTTCGTGTTGATGCTATTGAACTATCTGATTATCTGA AGCAATCCAATGGGTATCCTGACTTGAGATTGAAGTTGAGTATTATCATACCATCCGTTGTCTCATCGTGGTTTGTCATCATCCTATTCGCCTATCTGTG TCTCAGGAAGTGGAAAAGGAGAAAGGTGACGAACAGAAAGATCAGAACTTTATTTAATCCAAGTGATGGTTCGAGTTACTTGGAAGATTCTTTGCCTCGA AGAGAAATCAAGCGAAACACCATCTACCCAGAATTACCAATTTTCAGACTAAGCACTATACACGAAGCCACCTGCAGTTTTTCTCCAGCAAACAAACTTG GACAAGGAGGTTTTGGTTCAGTCTACAAGGGGAAACTATCCAATGGACTTGAGGTTGCTGTAAAACGACTGTCGAAAGATTCGAGGGAAGGGTTAGAACA GTTTAAGAACGAGGCACTGTCAATCGTTAAGCTGCAGCACAGGAACCTTGTGAAGCTTCATGGCTGCTGCATTGATGACGATGAGAAAATTCTGGTGTAT GAATACTTGCCTTGCAATAGTTTGGATGCACTTCTTTTCGGCAAGTCTCCTTTACTTCGGACGGAAAGTCCTTTCTTAGATTGGCGGAAACGGTTCGATA TAATCAAGGGTATTGCCCGTGGGATCCTGTATCTTCATGAGGATTCGAGGTTCAGAATAATTCACAGAGATCTCAAACCAAGCAATATCCTCCTGGATGC TGAGCTGAATCCGAAAATCTCCGATTTCGGGATGGCTAAGATATTGGGCAGCAACCAGGTTCAAGAAAAGACTGGTAGAGTTTGTGGAACATATGGTTAT ATGTCACCGGAGTACGCAATCTTCGGAAGGTATTCAGTGAAATCCGATGTCTTCAGCTTCGGGGTGATACTCCTGGAAACAGTCACTGGAAAGAAGATCA ACGGGTACTTCCAGGAAGATCCTTGGTTGAACTTGATCAGCCACGTATGGGAGCTTTGGAGGGCAGGCAGAGCCGCGGAGGTGATTGAGTCGCTCGAAGA CTCGAATGCTGTACTCAGATGCGTCCATATCGGTCTACTGTGTGTCGAGGAAAATGCAGCGGACCGTCCCGATATGCCAGCAGTAGTTCTTATGTTGAAC AGTGAAACGGCTCCGCTTCCGTCCCCGCAAAGACCTGCATTCGTTCACGTGAGATCCAAGCTACCGTCGACACAGGGAGACACTTGCTCCGTAAACGAGA TGTCGTTCTCAGTGGTTGCGAGTCGCTGA
AA sequence Show only first row Show all	>Lus10007610 pacid=23140337 polypeptide=Lus10007610 locus=Lus10007610.g ID=Lus10007610.BGIv1.0 annot-version=v1.0 METVNLVLLSLVILFHRTSSTTSLGSTISANQSLTDGSTVVSEGGKFALGFFSRGSSSYRYLGIWYNEIPERTVVWVANRDHPIAGNSGFLLNHESCNLF LYSNSSSSSSNLPVWSANVSSGLHGPCLAQLLDSGNFVLMAGGGKSWRNSVWESFEHPTDTSLPGMKLGMSRRTGVNRFLTSWRSEDNPGTGTFTYKLNP SGSPQFFLYKGVSPYWRGVPWPWGILGFLNTTFETNEDGIYYSDMYMNYSTYGRLVIRPSGLLNMMMWDGGEGQWKVIFSSPKHECDFYGSCGPFAKCYS SIVFPYECDCLPGYEPRYPRKWEARDKSGGCVRKRSELSSICGGGEGFVRVEKVKIPDASTAVSMDEAGVSKSKCEDKCRKNCSCSAYATININGKRTSC WTWYGDLIDTVHLAVDAYDLYVRVDAIELSDYLKQSNGYPDLRLKLSIIIPSVVSSWFVIILFAYLCLRKWKRRKVTNRKIRTLFNPSDGSSYLEDSLPR REIKRNTIYPELPIFRLSTIHEATCSFSPANKLGQGGFGSVYKGKLSNGLEVAVKRLSKDSREGLEQFKNEALSIVKLQHRNLVKLHGCCIDDDEKILVY EYLPCNSLDALLFGKSPLLRTESPFLDWRKRFDIIKGIARGILYLHEDSRFRIIHRDLKPSNILLDAELNPKISDFGMAKILGSNQVQEKTGRVCGTYGY MSPEYAIFGRYSVKSDVFSFGVILLETVTGKKINGYFQEDPWLNLISHVWELWRAGRAAEVIESLEDSNAVLRCVHIGLLCVEENAADRPDMPAVVLMLN SETAPLPSPQRPAFVHVRSKLPSTQGDTCSVNEMSFSVVASR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G11410			S-locus lectin protein kinase ...		Lus10007610 [exp]	0	1
AT1G62510			Bifunctional inhibitor/lipid-t...		Lus10001493 [exp]	2.4	0.8688
AT2G27710			60S acidic ribosomal protein f...		Lus10019846 [exp]	3.5	0.7980
					Lus10024012 [exp]	6.5	0.7860
AT5G58820			Subtilisin-like serine endopep...		Lus10002245 [exp]	10.5	0.7002
AT3G46570			Glycosyl hydrolase superfamily...		Lus10000070 [exp]	11.7	0.7805
					Lus10019512 [exp]	12.4	0.7552
AT4G16270			Peroxidase superfamily protein...		Lus10017069 [exp]	15.2	0.7905
					Lus10003479 [exp]	19.3	0.7642
AT1G24020		MLP423	MLP-like protein 423 (.1.2)		Lus10039454 [exp]	22.7	0.7934
AT5G52850			Pentatricopeptide repeat (PPR)...		Lus10038834 [exp]	26.5	0.6937

Compare expression of checked genes

Lus10007610 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.