Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G11340 752 / 0 S-locus lectin protein kinase family protein (.1) AT1G11410 722 / 0 S-locus lectin protein kinase family protein (.1) AT4G21380 672 / 0 ARK3 receptor kinase 3 (.1) AT4G27290 665 / 0 S-locus lectin protein kinase family protein (.1) AT1G65790 660 / 0 ARK1 receptor kinase 1 (.1) AT1G11330 642 / 0 S-locus lectin protein kinase family protein (.1.2) AT4G21390 627 / 0 B120 S-locus lectin protein kinase family protein (.1) AT1G65800 623 / 0 ARK2 receptor kinase 2 (.1) AT1G11350 602 / 0 SD1-13, RKS2, CBRLK1 CALMODULIN-BINDING RECEPTOR-LIKE PROTEIN KINASE, S-domain-1 13 (.1) AT1G61610 596 / 0 S-locus lectin protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006746 [exp] 784 / 0 AT1G11340 836 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10020052 [exp] 778 / 0 AT1G11340 858 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10024064 [exp] 717 / 0 AT1G11340 735 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10038557 [exp] 704 / 0 AT4G27290 803 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10006745 [exp] 701 / 0 AT1G11340 774 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10037865 [exp] 699 / 0 AT4G27300 804 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10041680 [exp] 695 / 0 AT1G15520 1646 / 0.0 Arabidopsis thaliana ATP-binding cassette G40, ATP-binding cassette G40, pleiotropic drug resistance 12 (.1) Lus10038552 [exp] 688 / 0 AT4G27290 879 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10007604 [exp] 677 / 0 AT1G11340 694 / 0.0 S-locus lectin protein kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G028600 [exp] 826 / 0 AT1G11340 875 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.004G028701 [exp] 824 / 0 AT1G11340 899 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.004G028466 [exp] 822 / 0 AT1G11340 884 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.001G411400 [exp] 729 / 0 AT4G27290 770 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.011G036400 [exp] 728 / 0 AT1G11340 726 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.001G413800 [exp] 726 / 0 AT4G27290 991 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.011G036600 [exp] 720 / 0 AT1G11340 741 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.011G035800 [exp] 717 / 0 AT1G11340 705 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.001G411300 [exp] 717 / 0 AT4G27290 759 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.004G028300 [exp] 717 / 0 AT1G11340 742 / 0.0 S-locus lectin protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00954 [flax] [poplar] S_locus_glycop S-locus glycoprotein domain CL0016 [flax] [poplar] PKinase PF07714 [flax] [poplar] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase CL0168 [flax] [poplar] PAN PF08276 [flax] [poplar] PAN_2 PAN-like domain CL0168 [flax] [poplar] PF01453 [flax] [poplar] B_lectin D-mannose binding lectin
Representative CDS sequence Show only first row Show all	>Lus10007611 pacid=23140329 polypeptide=Lus10007611 locus=Lus10007611.g ID=Lus10007611.BGIv1.0 annot-version=v1.0 ATGGATAAGCTACTAGCAATGGTTTTCACCTTCTCTGTTATTCGACTCTGTTCTTCAGCAGACACCATAGACTTCAACGAGTCCCTTGCAGACGGCGACA ATGGTGGCGTCTTATTAGTGTCCAATGGAGGAACATACACTCTGGGATTCTTCAACCCTGGGAATTCAAGAAATAGATACGTCGGAATTTGGTACACCAA GGTTCCTGTACGGACGGTGGTTTGGGTTGCAAACAGAGACAGTCCGATCAACGATACTTCCGGGTTGATATATTTTGATGGTCGAGGCGACATCGTTTTG ATGCAGAGGAGCAGTAATGCGACGGTGTGGTCTACGAATGTGTCCGCCAGTGGGAAGTCGACGACGGCTCGGCTGTTGGATGTTGGGAATCTGGTCTTGC TCCGGCGAGATGGGTTTGTTACTTCCGGCGAGATTAATCAGTGTGACGGTAAGGAGATTATATGGCAGAGTTTTGATCACCCGACCGATACAATATTCCC ATTTATGAAGTTTGGAACGAACTACAAAACTGGATTAAATTCATCACTTTATTCTTGGAAGTCCCTTGACGATCCTGGAAGGGGGGACTTTTCATATTAC ATGGATCGGGATGTAATACCTCAACTAACCTTGTACAAAGGTCATACTAAAATTTGGCGTACTGGGCCGTGGAACGGCGTCCGGTGGAGTGGGATTCCAA ACGATCATTTCATATTCAACAACACTGTCGTTAGCAACGATGTCGAATCCACGTTCATGTGGGGAATTACGTGCCCCACCATCATAGCGAGGATTTTGGT GGACACATCGGGGTTGCTGATACAATCCGTGTGGCGCGATAAGGAAAACCATTGGGAAGTATTGTCGTCTCACCCGATGTCGCTGTGTGGCCAATACGGA CACTGTGGACCAAACGGGAATTGCGACCGGTACAAGAATCCGGGAGGATTCGAGTGCGCGTGCCTTCCTGGGTTCGTTCCCAAATACGAGAATGAGTGGT CAGTTAATGATGGCTCGGGAGGGTGTGTGCGAAGGAAAAGAGGGAATTCAAGTACAGATATTTGTGGGGATGGCGAAGGGTTTGTGAAGGTGGAAAATCT CAAAGTTCCAGACACACGGTCTGGAATTAGATTGAACTCAAGCATCAATTTGGACTCGTGTCGTGCAGAATGCTTGAAGAACTGTTCTTGTTCGAGTTAT GCTAGTGCTAATTTGACGAGTGGAATTGGGTGCATCACGATCTATGGTGATATGCTCGATACTCGAGTTATAGGAAATGGCGGGCAAGATTTGTATGTAC GTGTCAATGCCATTGAATTAGGTGAATACATGAAAAGGTTGAAAGGGCACACAAAGAAAAAGAAGATTCTTGTAATTGTCTTGGCCTCCACTGGAGTTGC CTTCATTTTGGCTACCTCCATTGTATATTGGCTCCTGAAAATCAAAAGAAATGGAGACAACGACCTTACTAACGATATTGACCAAGTAACGGTTTTTAGA GAAAGTGACATACTTACCGCCACCGAGAATTTTTCGGTGGAGAACAAACTTGGACAAGGTGGTTTCGGCTCTGTTTACAAGGGTTTGTTACTTGACGGAC AAGACATCGCAGTGAAAAAATTATCTCAAACTTCAAAACAAGGTATAGATGAATTCAAGAATGAAGTCAAGCTAATGTCCAAGCTACAACACAAGAATCT AGCAAGGTTACTTGGTTGTTGTATTCATGGAGATGAGAAGATGTTGGTCTATGAGTATTTGCCCAACAAAAGCTTGGACCTCTTTATTTTTGATAAAGAA AATGAATTGGTGTTGGATTGGAGGACACGCTTTGATATCATCATTGGGATTGCTCGAGGGTTATTGTATTTACACCAAGATTCGAGGCTAAAAATTATAC ACAGGGATATGAAAGCAAGCAACGTTCTTCTTGATGCCACGATGAATCCAAAGATATATGATTTCGGGATGGCTAGATTGTTCGGGGAGGATCAGACGGA GGCTAACACAAACAGAGTCGTTGGAACCTACGGATATATGTCGCCAGAGTATGCAATGGAAGGTCTATACTCGACCAAATCCGACGTCTTTAGCTTTGGT GTCTTAGTACTTGAGACAGTGACGGGAAGGAGAAGCAACCATTGCTACGAGGAAGATCGGTCGATAACCTTAATTGGTCATGTGTGGGAGCTATGGAAAG AAGGAAGAGTGATAGACATTGTGGATTCCTCGTCCACTAGAGAGACATACTCCGAAGATCAAGCGATCAGATGCATTCATATAGGTCTTCTATGCGTACA AAAGTCTCCCAAAGATCGACCGACAATGTCTAATGTCGTGTTCAAGTTAGGCAACAAAACCGCACTTTCTTCCCCAAAGAAACCGGCATTCGTTCTCCAG AAGAAACACCATGATTCACAGTCGTTACATGCAACTACATCAACAACTTCTTCCATCAATTGCATGTCAACAACAACCATCGTCGAAGGTCGATGA
AA sequence Show only first row Show all	>Lus10007611 pacid=23140329 polypeptide=Lus10007611 locus=Lus10007611.g ID=Lus10007611.BGIv1.0 annot-version=v1.0 MDKLLAMVFTFSVIRLCSSADTIDFNESLADGDNGGVLLVSNGGTYTLGFFNPGNSRNRYVGIWYTKVPVRTVVWVANRDSPINDTSGLIYFDGRGDIVL MQRSSNATVWSTNVSASGKSTTARLLDVGNLVLLRRDGFVTSGEINQCDGKEIIWQSFDHPTDTIFPFMKFGTNYKTGLNSSLYSWKSLDDPGRGDFSYY MDRDVIPQLTLYKGHTKIWRTGPWNGVRWSGIPNDHFIFNNTVVSNDVESTFMWGITCPTIIARILVDTSGLLIQSVWRDKENHWEVLSSHPMSLCGQYG HCGPNGNCDRYKNPGGFECACLPGFVPKYENEWSVNDGSGGCVRRKRGNSSTDICGDGEGFVKVENLKVPDTRSGIRLNSSINLDSCRAECLKNCSCSSY ASANLTSGIGCITIYGDMLDTRVIGNGGQDLYVRVNAIELGEYMKRLKGHTKKKKILVIVLASTGVAFILATSIVYWLLKIKRNGDNDLTNDIDQVTVFR ESDILTATENFSVENKLGQGGFGSVYKGLLLDGQDIAVKKLSQTSKQGIDEFKNEVKLMSKLQHKNLARLLGCCIHGDEKMLVYEYLPNKSLDLFIFDKE NELVLDWRTRFDIIIGIARGLLYLHQDSRLKIIHRDMKASNVLLDATMNPKIYDFGMARLFGEDQTEANTNRVVGTYGYMSPEYAMEGLYSTKSDVFSFG VLVLETVTGRRSNHCYEEDRSITLIGHVWELWKEGRVIDIVDSSSTRETYSEDQAIRCIHIGLLCVQKSPKDRPTMSNVVFKLGNKTALSSPKKPAFVLQ KKHHDSQSLHATTSTTSSINCMSTTTIVEGR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G11340			S-locus lectin protein kinase ...		Lus10007611 [exp]	0	1
AT4G27290			S-locus lectin protein kinase ...		Lus10006772 [exp]	1.7	0.9127
AT1G28110		SCPL45	serine carboxypeptidase-like 4...		Lus10013395 [exp]	2.8	0.8765
AT1G53430			Leucine-rich repeat transmembr...		Lus10017953 [exp]	4.0	0.8619
AT4G17090		CT-BMY, BMY8, B...	BETA-AMYLASE 8, BETA-AMYLASE 3...		Lus10003005 [exp]	8.5	0.8550
AT1G75900		EXL3	GDSL-like Lipase/Acylhydrolase...		Lus10041878 [exp]	9.0	0.8727
AT1G08810	MYB	ATMYB60	myb domain protein 60 (.1.2)		Lus10009522 [exp]	11.6	0.8603
AT4G14103			F-box/RNI-like superfamily pro...		Lus10017218 [exp]	11.9	0.7780
AT4G25830			Uncharacterised protein family...		Lus10015528 [exp]	17.0	0.8317
AT4G04330		AtRbcX1	homologue of cyanobacterial Rb...		Lus10011972 [exp]	17.3	0.8455
AT3G61430		ATPIP1, PIP1;1,...	PLASMA MEMBRANE INTRINSIC PROT...		Lus10042385 [exp]	20.6	0.8333

Compare expression of checked genes

Lus10007611 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.