Lus10007612 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G27270 329 / 1e-115 Quinone reductase family protein (.1)
AT5G54500 326 / 2e-114 FQR1 flavodoxin-like quinone reductase 1 (.1.2)
AT4G36750 273 / 2e-92 Quinone reductase family protein (.1)
AT5G58800 258 / 3e-87 Quinone reductase family protein (.1.2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10018401 405 / 1e-145 AT4G27270 342 / 3e-121 Quinone reductase family protein (.1)
Lus10006748 368 / 9e-131 AT4G27270 323 / 5e-114 Quinone reductase family protein (.1)
Lus10020076 359 / 1e-127 AT4G27270 314 / 2e-110 Quinone reductase family protein (.1)
Lus10041718 268 / 2e-90 AT4G36750 357 / 3e-125 Quinone reductase family protein (.1)
Lus10026035 265 / 2e-89 AT4G36750 371 / 4e-131 Quinone reductase family protein (.1)
Lus10014325 263 / 1e-88 AT4G36750 370 / 2e-130 Quinone reductase family protein (.1)
Lus10005862 249 / 4e-84 AT5G58800 290 / 5e-101 Quinone reductase family protein (.1.2)
Lus10040486 228 / 4e-75 AT4G36750 291 / 6e-100 Quinone reductase family protein (.1)
Lus10024032 194 / 7e-63 AT4G36750 248 / 5e-84 Quinone reductase family protein (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.011G033100 338 / 2e-119 AT4G27270 352 / 1e-125 Quinone reductase family protein (.1)
Potri.004G028900 336 / 3e-118 AT4G27270 352 / 2e-125 Quinone reductase family protein (.1)
Potri.001G410700 328 / 2e-115 AT4G27270 345 / 1e-122 Quinone reductase family protein (.1)
Potri.011G129400 322 / 6e-113 AT4G27270 342 / 2e-121 Quinone reductase family protein (.1)
Potri.005G126200 264 / 3e-89 AT4G36750 361 / 4e-127 Quinone reductase family protein (.1)
Potri.007G029600 262 / 2e-88 AT4G36750 362 / 3e-127 Quinone reductase family protein (.1)
Potri.009G044400 259 / 4e-88 AT5G58800 322 / 3e-113 Quinone reductase family protein (.1.2)
Potri.004G151100 256 / 4e-86 AT4G36750 311 / 4e-107 Quinone reductase family protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0042 Flavoprotein PF03358 FMN_red NADPH-dependent FMN reductase
Representative CDS sequence
>Lus10007612 pacid=23140339 polypeptide=Lus10007612 locus=Lus10007612.g ID=Lus10007612.BGIv1.0 annot-version=v1.0
ATGACTAATGCGATATTGTTAGCAGTTTTATCATTAAGCTTTGAACCGTTAGTTTCATACGAGTCGAGCAAGAGAAAGCTTGATGGTGACATTGGACCTG
ATCAAAGACTTCTCCATGCTTTGGCCCCCCCAAATTACTATTCTATGTATGGACATGTTGAGAAGCTAGCAGAAGAGATCAAGAAAGGAGCTTCGAGTGT
TGAAGGTGTTGAAGTGAAGCTATGGCAGGTGGCAGAGACACTGCCAGAAGAGGTGCTGGGAAAGATGGGTGCACCAGCAAAGAAGAATGATGTGCCAATC
ATCACTGCCAATGATCTTCAAGAGGCTGATGGCATTCTTTTTGGATTTCCAACTCGGTTCGGAATGATGGCTGCTCAGTTCAAGGCGTTCATGGACTCCA
CTGGTGGGTTGTGGAGGACTCAGGCTCTTCAAGGGAAGCCTGCTGGTATTTTTTATGCTACTGGCTCTCAAGGTGGTGGACAGGAGACCACTCCATTGAC
AGCGATCACGCAGCTGGTGCACCACGGGATGGTGTTCGTCCCCGTGGGGTACACATTCGGAGCCGGGATGTTCGAGATGGAGCAGGTGAAAGGTGGGAGC
CCCTATGGTGCAGGGACATTTGCAGGGGATGGAACCAGGCAGCCAACTGAGCTAGAGCTTGGACTTGCTCACCACCAAGGGCAGTACTTTGCTGGCATTG
CCAAGAAAATGAAGGGTCCTTCTGCTGATGCTTGA
AA sequence
>Lus10007612 pacid=23140339 polypeptide=Lus10007612 locus=Lus10007612.g ID=Lus10007612.BGIv1.0 annot-version=v1.0
MTNAILLAVLSLSFEPLVSYESSKRKLDGDIGPDQRLLHALAPPNYYSMYGHVEKLAEEIKKGASSVEGVEVKLWQVAETLPEEVLGKMGAPAKKNDVPI
ITANDLQEADGILFGFPTRFGMMAAQFKAFMDSTGGLWRTQALQGKPAGIFYATGSQGGGQETTPLTAITQLVHHGMVFVPVGYTFGAGMFEMEQVKGGS
PYGAGTFAGDGTRQPTELELGLAHHQGQYFAGIAKKMKGPSADA

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT4G27270 Quinone reductase family prote... Lus10007612 0 1
AT3G59480 pfkB-like carbohydrate kinase ... Lus10020346 1.7 0.9061
AT1G52330 Late embryogenesis abundant (L... Lus10011458 3.5 0.9068
AT4G27270 Quinone reductase family prote... Lus10018401 4.6 0.9096
AT5G13420 Aldolase-type TIM barrel famil... Lus10043136 6.3 0.9033
AT2G32720 B5 #4, B5#4, AT... ARABIDOPSIS CYTOCHROME B5 ISOF... Lus10011858 8.8 0.8942
AT3G29200 ATCM1, CM1 ARABIDOPSIS THALIANA CHORISMAT... Lus10032998 8.8 0.8954
AT2G25620 AtDBP1 DNA-binding protein phosphatas... Lus10030115 10.0 0.8860
AT5G50850 MAB1 MACCI-BOU, Transketolase famil... Lus10032549 11.0 0.8517
AT1G15950 IRX4, ATCCR1, C... IRREGULAR XYLEM 4, cinnamoyl c... Lus10024068 11.8 0.8981
AT2G28370 Uncharacterised protein family... Lus10041312 12.3 0.8452

Lus10007612 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.