Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G61660 177 / 2e-52 bHLH bHLH112 basic helix-loop-helix (bHLH) DNA-binding superfamily protein AT3G20640 171 / 2e-49 bHLH bHLH123 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT4G21340 135 / 3e-37 bHLH bHLH103, B70 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT3G19500 127 / 8e-35 bHLH bHLH113 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT1G27660 127 / 3e-33 bHLH bHLH110 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT4G05170 123 / 3e-33 bHLH bHLH114 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT2G20100 125 / 4e-33 bHLH basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) AT4G29100 119 / 2e-30 bHLH bHLH068 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT1G31050 118 / 7e-30 bHLH bHLH111 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT1G05710 108 / 1e-28 bHLH bHLH153 basic helix-loop-helix (bHLH) DNA-binding superfamily protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018400 [exp] 470 / 5e-168 AT1G61660 195 / 3e-59 basic helix-loop-helix (bHLH) DNA-binding superfamily protein Lus10038550 [exp] 196 / 2e-58 AT3G20640 231 / 4e-70 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10014807 [exp] 143 / 7e-39 AT3G20640 179 / 5e-51 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10025599 [exp] 117 / 4e-32 AT1G05710 169 / 8e-55 basic helix-loop-helix (bHLH) DNA-binding superfamily protein Lus10027064 [exp] 117 / 4e-32 AT1G05710 174 / 9e-57 basic helix-loop-helix (bHLH) DNA-binding superfamily protein Lus10023669 [exp] 123 / 6e-32 AT2G20100 223 / 5e-69 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) Lus10013874 [exp] 121 / 1e-31 AT3G19500 151 / 7e-44 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10010638 [exp] 118 / 5e-30 AT1G27660 180 / 1e-51 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10041649 [exp] 99 / 6e-24 AT2G31730 117 / 2e-32 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G029100 [exp] 233 / 6e-73 AT1G61660 216 / 1e-65 basic helix-loop-helix (bHLH) DNA-binding superfamily protein Potri.011G033000 [exp] 220 / 5e-68 AT1G61660 216 / 2e-65 basic helix-loop-helix (bHLH) DNA-binding superfamily protein Potri.001G410600 [exp] 206 / 7e-63 AT3G20640 274 / 2e-87 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.011G129500 [exp] 201 / 4e-61 AT3G20640 289 / 3e-93 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.018G083700 [exp] 137 / 1e-37 AT4G29100 279 / 3e-91 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.003G051600 [exp] 130 / 3e-35 AT4G29100 197 / 4e-60 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.001G185900 [exp] 129 / 4e-35 AT4G29100 212 / 5e-66 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.001G299300 [exp] 127 / 1e-34 AT3G19500 152 / 4e-45 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.009G094300 [exp] 123 / 4e-33 AT3G19500 161 / 2e-48 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.019G112000 [exp] 119 / 7e-33 AT1G05710 180 / 2e-59 basic helix-loop-helix (bHLH) DNA-binding superfamily protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10007613 pacid=23140324 polypeptide=Lus10007613 locus=Lus10007613.g ID=Lus10007613.BGIv1.0 annot-version=v1.0 ATGGGTTTCGGCGTTGGCGTATCGTCTTCTTCGCCGTCGTCGGAGGATTGGAATCAGCGACAGCAACTTGGGAGTGGTAACTACAACAGTACTTCAATGC TGGAAGATGAAATGAACAGCTGCGGTCGTCCACTCAACCATAATCTAAGTGGGTTGACCAATGATTTCTCTTCGAATCCGATTCATGGCTACCCGATTCA AGGCCTGTTCGAATCCGATTCGCAACAAAACCCGATATTCGTCAACAATTTCCCGTCCTCTTCTACTACTTACGGGACCGGAAACAGTTTGTTGTTGAAT GGATTGTCCCCTTCGTGGTCGAAATTCCAAAACCCTAATCATCAAAACGACAATCACCACCAAGATCACCTTCGGTTCTCGAATGGTGTGATGCCGTTTT GGAACAATCAAGCAGCAACCCAGACCGATAGTATTCGAACCGGTTATGCACCGACACAAACCCGGTTCGTTGCCCCGGCTTTTGACGAGAAACCAACCAG TTGCCCCAGTAGCAGCTCCACCAAGTCTAAGAAGGAAGAAGCTACTAATAATACTACCAAGGAGTCGAAACCGAAAACAAAGAAGGAAACCGGTTCCGAG TCGTCTTTCAAACGACCTCGAATCGAGACTCCATCCTCGTTGCCAACTTTTAAGGTTCGAAAAGAGAAGTTGGGCGACCGAATAACTGCTCTACAACAAC TGGTTTCACCCTTCGGAAAGACGGATACAGCATCAGTGCTCCATGAAGCCATTGAGTACATTAAATTCCTCCATGACCAAGTCGGTGTTTTAAGCACTCC ATACATGAAGAATGGAAACCCTATTCAGCACCACTCACAGGGTTGTGACAAATTGGACCAAAACGAACAAGACCTAAGAAGCCGAGGGCTATGTTTGGTC CCAATCTCAAGCACTTTCCCAGTTGCTCATGAGACCACAGCAGATTTCTGGACTCCAACTTTTGGTGGCTCCTTCAGGTAG
AA sequence Show only first row Show all	>Lus10007613 pacid=23140324 polypeptide=Lus10007613 locus=Lus10007613.g ID=Lus10007613.BGIv1.0 annot-version=v1.0 MGFGVGVSSSSPSSEDWNQRQQLGSGNYNSTSMLEDEMNSCGRPLNHNLSGLTNDFSSNPIHGYPIQGLFESDSQQNPIFVNNFPSSSTTYGTGNSLLLN GLSPSWSKFQNPNHQNDNHHQDHLRFSNGVMPFWNNQAATQTDSIRTGYAPTQTRFVAPAFDEKPTSCPSSSSTKSKKEEATNNTTKESKPKTKKETGSE SSFKRPRIETPSSLPTFKVRKEKLGDRITALQQLVSPFGKTDTASVLHEAIEYIKFLHDQVGVLSTPYMKNGNPIQHHSQGCDKLDQNEQDLRSRGLCLV PISSTFPVAHETTADFWTPTFGGSFR

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G61660	bHLH	bHLH112	basic helix-loop-helix (bHLH) ...		Lus10007613 [exp]	0	1
AT4G33090		ATAPM1, APM1	aminopeptidase M1 (.1)		Lus10025002 [exp]	3.5	0.8713
AT1G61660	bHLH	bHLH112	basic helix-loop-helix (bHLH) ...		Lus10018400 [exp]	3.9	0.7983
AT1G13130			Cellulase (glycosyl hydrolase ...		Lus10011403 [exp]	4.6	0.8428
					Lus10022031 [exp]	5.3	0.8700
AT5G03810			GDSL-like Lipase/Acylhydrolase...		Lus10035590 [exp]	5.5	0.8356
AT1G48040			Protein phosphatase 2C family ...		Lus10037832 [exp]	5.5	0.8346
AT2G01818			PLATZ transcription factor fam...		Lus10003680 [exp]	9.4	0.8126
AT5G54390		ATAHL, AHL	HAL2-like (.1)		Lus10011231 [exp]	9.9	0.8161
AT3G14360			alpha/beta-Hydrolases superfam...		Lus10003925 [exp]	11.1	0.8383
AT2G43120			RmlC-like cupins superfamily p...		Lus10019561 [exp]	12.7	0.8293

Compare expression of checked genes

Lus10007613 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.