Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G18600 215 / 1e-68 ATRBL12 ARABIDOPSIS RHOMBOID-LIKE PROTEIN 12, RHOMBOID-like protein 12 (.1) AT1G74130 124 / 8e-34 Rhomboid-related intramembrane serine protease family protein (.1.2) AT1G74140 104 / 2e-26 Rhomboid-related intramembrane serine protease family protein (.1.2.3.4.5)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018399 [exp] 0 / 1 AT1G18600 260 / 2e-85 ARABIDOPSIS RHOMBOID-LIKE PROTEIN 12, RHOMBOID-like protein 12 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G227300 [exp] 225 / 8e-73 AT1G18600 324 / 3e-110 ARABIDOPSIS RHOMBOID-LIKE PROTEIN 12, RHOMBOID-like protein 12 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0207 [flax] [poplar] Rhomboid-like PF01694 [flax] [poplar] Rhomboid Rhomboid family
Representative CDS sequence Show only first row Show all	>Lus10007614 pacid=23140288 polypeptide=Lus10007614 locus=Lus10007614.g ID=Lus10007614.BGIv1.0 annot-version=v1.0 ATGGTTACAGTTCTTCTTCATTTCTCTACCATTCTCAACCTCACAGCAGCAAGCTCTTCACTACTCTCAACACCCCAGTTGGCGGAAACTCCCTTCATCA CCGAATTCAATGTTTCCCCATCTGTACTGGGAAGATATTCCATGGCTACCGACCCAATTTCAGAAGTCTCGTTGAGCGTAGTGGAGATGGGTTCCTGGAG GCTCGTATTGCCAGAGGATACCGTGGAGGATTCGACAGAGGTTTCCGCTCATATGGGGATCATGCTTAATCGGCTGACACCCAACGACGTCGTATGGGGA TTGGTTATTGCTAATGCTGCTGTTTTCTTTCTGTGGCGGATTGCAAGTCCAAGGTTTATGGTGCAGAACTTTATGATTTCTGTGGACAACTTCAGAAGTG GGCGCATTCATACGCTGATTACATCTGCATTTAGCCATAAAGATCTTGAACACCTTTTATCCAACATGTTTGGACTTTACTTCTTCGGAATCAATTTGTA TCTAGCGGGAGCAATTGGTGGCTCGGTGTTCTACTTGTTGCACCACTACTTGATGGCTCTATCATCACAGGATCAAGGAACTTTCAGGAGAGACCCTTCG AGGACTCCTGGATTGGGAGCTAGTGGGGCTGTGAATGCGATCATGCTGCTTGAAATATTCCTGAATCCAAAAGCCACCATCATGCTCGACTTTATTATTC CGGTGCCTGCCATGTTATTGGGCAAGTCACTTGATCGTAAGGGTAGAGTCGGTTAA
AA sequence Show only first row Show all	>Lus10007614 pacid=23140288 polypeptide=Lus10007614 locus=Lus10007614.g ID=Lus10007614.BGIv1.0 annot-version=v1.0 MVTVLLHFSTILNLTAASSSLLSTPQLAETPFITEFNVSPSVLGRYSMATDPISEVSLSVVEMGSWRLVLPEDTVEDSTEVSAHMGIMLNRLTPNDVVWG LVIANAAVFFLWRIASPRFMVQNFMISVDNFRSGRIHTLITSAFSHKDLEHLLSNMFGLYFFGINLYLAGAIGGSVFYLLHHYLMALSSQDQGTFRRDPS RTPGLGASGAVNAIMLLEIFLNPKATIMLDFIIPVPAMLLGKSLDRKGRVG

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G18600		ATRBL12	ARABIDOPSIS RHOMBOID-LIKE PROT...		Lus10007614 [exp]	0	1
AT4G35520		MLH3, ATMLH3	MUTL protein homolog 3 (.1)		Lus10035985 [exp]	3.7	0.7748
AT1G09020		ATSNF4, SNF4	homolog of yeast sucrose nonfe...		Lus10037504 [exp]	6.9	0.7652
AT2G43980		ATITPK4	"inositol 1,3,4-trisphosphate ...		Lus10006145 [exp]	7.1	0.7696
AT5G35170			adenylate kinase family protei...		Lus10019071 [exp]	8.1	0.7637
AT4G20990		ATACA4, ACA4	A. THALIANA ALPHA CARBONIC ANH...		Lus10018034 [exp]	15.4	0.6765
AT5G39940			FAD/NAD(P)-binding oxidoreduct...		Lus10001121 [exp]	20.6	0.7649
AT1G70630			Nucleotide-diphospho-sugar tra...		Lus10006212 [exp]	21.0	0.7404
AT3G09180			unknown protein		Lus10021276 [exp]	26.2	0.7184
AT3G45330			Concanavalin A-like lectin pro...		Lus10003574 [exp]	29.0	0.6212
AT5G01510		RUS5	ROOT UV-B SENSITIVE 5, Protein...		Lus10027788 [exp]	30.5	0.7609

Compare expression of checked genes

Lus10007614 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.