Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G11440 67 / 1e-12 unknown protein AT3G29075 49 / 9e-07 glycine-rich protein (.1) AT5G39570 43 / 0.0001 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018397 [exp] 307 / 2e-105 AT1G11440 98 / 2e-23 unknown protein Lus10029322 [exp] 55 / 2e-08 AT5G39570 144 / 2e-40 unknown protein Lus10001317 [exp] 51 / 5e-07 AT1G13120 481 / 1e-162 embryo defective 1745 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G032700 [exp] 103 / 2e-25 AT1G11440 71 / 1e-13 unknown protein Potri.004G029500 [exp] 66 / 6e-13 AT1G11440 68 / 2e-13 unknown protein Potri.017G087200 [exp] 56 / 1e-08 AT5G39570 112 / 3e-27 unknown protein Potri.004G127400 [exp] 49 / 2e-06 AT5G39570 139 / 4e-37 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10007616 pacid=23140335 polypeptide=Lus10007616 locus=Lus10007616.g ID=Lus10007616.BGIv1.0 annot-version=v1.0 ATGCAGTTGATCTCCGGCGACGCAATTGCCTACAGTTACTACGGCGGCGGAGGCGCATCGTACAGCTACAATTACTACGCCGCCGGTGATTACTCTTACT CTCATCATCACTACTACGATTCAGCTCTTTATCCCTATGAATCGAGAGCTGCTAATTACAATTACTACGCCTGTGAACAATTACCCAGTCTGACTCACTA CGCCGAGTCCAACCCGACTCAGTCGATTTCTCTGTTGGAGTTCAACGAGACCGATTTCGAAGAGTACGATTCCACCCCTTACGGAGGCGGCTATGACCTC GCTCAAACCTACGGCAATCCGCTTCCTCAGTCCGATCAAACCTGCTACCCACGTTCCACGGCGGTGAATATAATCCCATCCGCCGTCGTCGCCGCTGCCC CAATTTTAACAGCTCCACAGGTAGAAATTCGTAAACCAGATAAGCCGAAAATCGAGGAATCAAAGCCGAAGGAGATGGAGAAGATCGAGGAATTAGAAGT GGATGTGGGTGAGGATGGGTACGGTTATGGTGGAAGCGGGTATGCGGGCCGGGTACCGTCGGGTTACGGGTTGGAGGCGGTGGATTTGTGCGAGAGTTTG TTCGGGTACTGGCCGTGTTTGGAGAAGAGTAGAAGGGAGAGTGAGGGTTATTATGGGAAGGGAGGTGGGGATTATTGTGTTAGAGAGTGGAATGATACTG CGGCGGATTATTTGTTCGGGAGCTCGTATGATCCGTATGCCGACGGCGGCGGTGGTTGGGATTATCGGCGGCGGGATTGGGCGTCGGGGGAGAGTTATCA GTGTACGAATGGTGAAGACTGA
AA sequence Show only first row Show all	>Lus10007616 pacid=23140335 polypeptide=Lus10007616 locus=Lus10007616.g ID=Lus10007616.BGIv1.0 annot-version=v1.0 MQLISGDAIAYSYYGGGGASYSYNYYAAGDYSYSHHHYYDSALYPYESRAANYNYYACEQLPSLTHYAESNPTQSISLLEFNETDFEEYDSTPYGGGYDL AQTYGNPLPQSDQTCYPRSTAVNIIPSAVVAAAPILTAPQVEIRKPDKPKIEESKPKEMEKIEELEVDVGEDGYGYGGSGYAGRVPSGYGLEAVDLCESL FGYWPCLEKSRRESEGYYGKGGGDYCVREWNDTAADYLFGSSYDPYADGGGGWDYRRRDWASGESYQCTNGED

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G11440			unknown protein		Lus10007616 [exp]	0	1
AT1G11440			unknown protein		Lus10018397 [exp]	2.0	0.8045
AT5G54855			Pollen Ole e 1 allergen and ex...		Lus10001821 [exp]	4.9	0.8356
AT1G67600			Acid phosphatase/vanadium-depe...		Lus10011373 [exp]	5.0	0.8433
AT1G03350			BSD domain-containing protein ...		Lus10042670 [exp]	9.0	0.8293
AT3G58630	Trihelix		sequence-specific DNA binding ...		Lus10015281 [exp]	14.4	0.7770
AT5G04530		KCS19	3-ketoacyl-CoA synthase 19 (.1...		Lus10033625 [exp]	17.7	0.7928
AT1G54115		ATCCX4	cation calcium exchanger 4 (.1...		Lus10015668 [exp]	18.6	0.7953
AT2G44600			unknown protein		Lus10043351 [exp]	19.2	0.7434
AT1G67600			Acid phosphatase/vanadium-depe...		Lus10006432 [exp]	22.1	0.7768
AT1G02070			unknown protein		Lus10009267 [exp]	22.6	0.7930

Compare expression of checked genes

Lus10007616 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.