Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G61667 161 / 3e-51 Protein of unknown function, DUF538 (.1) AT5G54530 148 / 4e-46 Protein of unknown function, DUF538 (.1) AT3G07470 99 / 7e-27 Protein of unknown function, DUF538 (.1) AT5G16380 100 / 9e-27 Protein of unknown function, DUF538 (.1) AT3G07460 93 / 4e-24 Protein of unknown function, DUF538 (.1.2) AT1G55265 84 / 6e-21 Protein of unknown function, DUF538 (.1) AT5G19860 68 / 1e-14 Protein of unknown function, DUF538 (.1) AT2G03350 51 / 3e-08 Protein of unknown function, DUF538 (.1) AT4G02360 38 / 0.0009 Protein of unknown function, DUF538 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018396 [exp] 249 / 7e-86 AT1G61667 176 / 5e-57 Protein of unknown function, DUF538 (.1) Lus10020075 [exp] 191 / 4e-63 AT1G61667 178 / 6e-58 Protein of unknown function, DUF538 (.1) Lus10006749 [exp] 172 / 1e-55 AT1G61667 171 / 2e-55 Protein of unknown function, DUF538 (.1) Lus10019216 [exp] 104 / 2e-28 AT3G07470 185 / 5e-60 Protein of unknown function, DUF538 (.1) Lus10039620 [exp] 103 / 4e-28 AT3G07470 181 / 4e-58 Protein of unknown function, DUF538 (.1) Lus10029538 [exp] 103 / 4e-28 AT3G07470 192 / 5e-63 Protein of unknown function, DUF538 (.1) Lus10020218 [exp] 103 / 4e-28 AT5G16380 157 / 3e-49 Protein of unknown function, DUF538 (.1) Lus10025861 [exp] 101 / 5e-27 AT3G07470 171 / 4e-54 Protein of unknown function, DUF538 (.1) Lus10026841 [exp] 101 / 6e-27 AT5G16380 156 / 6e-48 Protein of unknown function, DUF538 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G032600 [exp] 172 / 2e-55 AT1G61667 177 / 1e-57 Protein of unknown function, DUF538 (.1) Potri.001G410300 [exp] 164 / 3e-52 AT5G54530 179 / 2e-58 Protein of unknown function, DUF538 (.1) Potri.004G029600 [exp] 158 / 5e-50 AT1G61667 175 / 8e-57 Protein of unknown function, DUF538 (.1) Potri.011G129900 [exp] 156 / 2e-49 AT5G54530 181 / 6e-59 Protein of unknown function, DUF538 (.1) Potri.014G177800 [exp] 113 / 3e-32 AT3G07470 192 / 3e-63 Protein of unknown function, DUF538 (.1) Potri.002G238900 [exp] 113 / 5e-32 AT3G07470 193 / 1e-63 Protein of unknown function, DUF538 (.1) Potri.001G008240 [exp] 86 / 1e-21 AT1G55265 137 / 8e-42 Protein of unknown function, DUF538 (.1) Potri.001G008320 [exp] 82 / 2e-20 AT1G55265 135 / 4e-41 Protein of unknown function, DUF538 (.1) Potri.003G217200 [exp] 80 / 3e-19 AT5G19860 196 / 1e-64 Protein of unknown function, DUF538 (.1) Potri.003G217300 [exp] 79 / 8e-19 AT1G55265 139 / 2e-42 Protein of unknown function, DUF538 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04398 [flax] [poplar] DUF538 Protein of unknown function, DUF538
Representative CDS sequence Show only first row Show all	>Lus10007617 pacid=23140326 polypeptide=Lus10007617 locus=Lus10007617.g ID=Lus10007617.BGIv1.0 annot-version=v1.0 ATGGCGTCCATCATAATCTTCTCCGTTTCCCTCCTCCTCATCCTCTCCCGTTCCTCCGCCGTGGCCGGCGACAAATCCTCCTCCCTGCAGAAGCTCCTCC ACAGCCAGGGCCTCCCCGGCGGGCTCTTCCCGGAGAATGTCAAATCGTTCGATCTCGACTCCAACGGCAAGCTCGAAGTCCACCTCGACGGCCCCTGTTT AGCCAAATTCGAAAACAGAGTCTTCTTTGAGTCCCACCTCAGAGCCAATCTCAGCTTCGGCGGCCTCGTTGGAATGGAAGGCCTCACCCAGGAAGAGCTC TTCCTTTGGTTCCCCGTCAAAGGAATCTTCGTGAAAGATCCCAGTTCAGGTGTTATTCTGTTTGATATTGGCCTTGCTCACAAATCGCTCTCTGTTTCTC TGTTTGAAGATCCCCCCTCTTGCAAGGCTGAAGGTGGGTTGGTGAAGCAGAGCAGAGGGACGATTGGATTTGCAGCTGAGAGATGA
AA sequence Show only first row Show all	>Lus10007617 pacid=23140326 polypeptide=Lus10007617 locus=Lus10007617.g ID=Lus10007617.BGIv1.0 annot-version=v1.0 MASIIIFSVSLLLILSRSSAVAGDKSSSLQKLLHSQGLPGGLFPENVKSFDLDSNGKLEVHLDGPCLAKFENRVFFESHLRANLSFGGLVGMEGLTQEEL FLWFPVKGIFVKDPSSGVILFDIGLAHKSLSVSLFEDPPSCKAEGGLVKQSRGTIGFAAER

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G61667			Protein of unknown function, D...		Lus10007617 [exp]	0	1
AT1G61667			Protein of unknown function, D...		Lus10018396 [exp]	8.8	0.8283
AT3G06145			unknown protein		Lus10034029 [exp]	12.4	0.7813
AT1G06980			unknown protein		Lus10025927 [exp]	13.5	0.8111
AT2G33850			unknown protein		Lus10015406 [exp]	20.2	0.8039
AT4G13950		RALFL31	ralf-like 31 (.1)		Lus10016646 [exp]	26.1	0.7649
AT4G20880			ethylene-responsive nuclear pr...		Lus10038459 [exp]	35.4	0.7182
AT3G05320			O-fucosyltransferase family pr...		Lus10040618 [exp]	49.3	0.7099
AT5G01710			methyltransferases (.1)		Lus10012217 [exp]	53.1	0.7542
AT3G05320			O-fucosyltransferase family pr...		Lus10018291 [exp]	59.8	0.7413
AT1G06475			unknown protein		Lus10020752 [exp]	60.5	0.7218

Compare expression of checked genes

Lus10007617 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.