Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G21330 140 / 3e-42 bHLH bHLH022, DYT1 DYSFUNCTIONAL TAPETUM 1, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT2G16910 99 / 4e-24 bHLH AMS, bHLH021 ABORTED MICROSPORES, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT1G12860 87 / 2e-20 bHLH SCRM2, ICE2, bHLH033 SCREAM 2, INDUCER OF CBF EXPRESSION 2, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT3G26744 83 / 1e-18 bHLH SCRM, ATICE1, ICE1, bHLH116 SCREAM, A. THALIANA INDUCER OF CBP EXPRESSION 1, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.4) AT4G29930 70 / 7e-15 bHLH bHLH027 basic helix-loop-helix (bHLH) DNA-binding superfamily protein AT2G28160 68 / 1e-13 bHLH ATFIT1, ATBHLH29, bHLH029, FIT1, ATBHLH029, FRU ARABIDOPSIS FE-DEFICIENCY INDUCED TRANSCRIPTION FACTOR 1, BASIC HELIX-LOOP-HELIX PROTEIN 29, FER-like regulator of iron uptake (.1) AT5G46760 67 / 2e-13 bHLH bHLH005, ATR2, MYC3 Basic helix-loop-helix (bHLH) DNA-binding family protein (.1) AT4G17880 67 / 3e-13 bHLH bHLH004, MYC4 Basic helix-loop-helix (bHLH) DNA-binding family protein (.1) AT5G57150 65 / 6e-13 bHLH bHLH035 basic helix-loop-helix (bHLH) DNA-binding superfamily protein AT1G01260 65 / 2e-12 bHLH bHLH013, INU4 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018395 [exp] 316 / 9e-111 AT4G21330 131 / 1e-37 DYSFUNCTIONAL TAPETUM 1, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10020074 [exp] 206 / 5e-68 AT4G21330 116 / 3e-32 DYSFUNCTIONAL TAPETUM 1, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10026278 [exp] 84 / 4e-19 AT2G16910 233 / 2e-69 ABORTED MICROSPORES, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10042395 [exp] 83 / 1e-18 AT2G16910 323 / 1e-103 ABORTED MICROSPORES, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10030609 [exp] 77 / 1e-16 AT2G16910 239 / 1e-74 ABORTED MICROSPORES, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10030880 [exp] 76 / 3e-16 AT2G16910 224 / 7e-69 ABORTED MICROSPORES, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10043199 [exp] 76 / 3e-16 AT3G26744 387 / 1e-129 SCREAM, A. THALIANA INDUCER OF CBP EXPRESSION 1, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.4) Lus10032542 [exp] 76 / 3e-16 AT3G26744 386 / 6e-129 SCREAM, A. THALIANA INDUCER OF CBP EXPRESSION 1, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.4) Lus10006951 [exp] 69 / 1e-14 AT5G57150 243 / 2e-81 basic helix-loop-helix (bHLH) DNA-binding superfamily protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G029800 [exp] 176 / 4e-56 AT4G21330 153 / 8e-47 DYSFUNCTIONAL TAPETUM 1, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.009G136300 [exp] 108 / 2e-27 AT2G16910 461 / 1e-156 ABORTED MICROSPORES, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.008G189600 [exp] 85 / 2e-19 AT1G10610 223 / 3e-67 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.006G074900 [exp] 81 / 1e-18 AT5G57150 200 / 3e-64 basic helix-loop-helix (bHLH) DNA-binding superfamily protein Potri.010G041500 [exp] 79 / 2e-18 AT2G16910 109 / 7e-28 ABORTED MICROSPORES, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.012G106000 [exp] 81 / 8e-18 AT3G26744 339 / 9e-111 SCREAM, A. THALIANA INDUCER OF CBP EXPRESSION 1, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.4) Potri.018G141800 [exp] 75 / 1e-16 AT5G57150 256 / 6e-86 basic helix-loop-helix (bHLH) DNA-binding superfamily protein Potri.015G105200 [exp] 77 / 2e-16 AT3G26744 323 / 1e-104 SCREAM, A. THALIANA INDUCER OF CBP EXPRESSION 1, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.4) Potri.002G176900 [exp] 71 / 1e-14 AT4G17880 277 / 2e-86 Basic helix-loop-helix (bHLH) DNA-binding family protein (.1) Potri.018G141600 [exp] 68 / 4e-14 AT5G57150 191 / 2e-60 basic helix-loop-helix (bHLH) DNA-binding superfamily protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00010 [flax] [poplar] HLH Helix-loop-helix DNA-binding domain
Representative CDS sequence Show only first row Show all	>Lus10007618 pacid=23140315 polypeptide=Lus10007618 locus=Lus10007618.g ID=Lus10007618.BGIv1.0 annot-version=v1.0 ATGGAGGGACAGAGCAGCAGGAAGAGAAGAACATCACTAAAGTCCGAAGAAACCGGATGCAAATCGAAGAACCTATTCGCGGAAAGGAGGCGGAGGGAGA AGCTCAACGATCGACTCCACTTGCTCCGCGCTTCGGTCCCCAATATCACTAATATGACCAAGGCCACCATTATAGACGATGCAATTGATTACATTCAGGA GCTGATGAGGAACGTCGAGCTTCTCAGCGGCCAACTCGAGCGATTTTCGGCTGATTCAACGCCAGATGAGTTTTGTGATGCTGCTGAGGAGATGACACAT TGTGGGATTCAGGAAGAAGTGGAGGTGGTTAGGATCGACGGGAAGAAGCTATGGGTGAAGATTGTGCTGGAGAAGAGGAAAGGAAGGTTCACTAAGCTGA TTGAAGCAATGACCAAGCTAGGGCTTCAGCCTGTTCATACAAGCTTGACTACTTCCAAAGGAGCATTCCTCATTTCATCTTGTGTTGAGACAGTGCACGT CGACAGCGAAATGGCGCAACGGATCAAGGATTTGCTGCTACAAGTTATCCGAGTAATATAA
AA sequence Show only first row Show all	>Lus10007618 pacid=23140315 polypeptide=Lus10007618 locus=Lus10007618.g ID=Lus10007618.BGIv1.0 annot-version=v1.0 MEGQSSRKRRTSLKSEETGCKSKNLFAERRRREKLNDRLHLLRASVPNITNMTKATIIDDAIDYIQELMRNVELLSGQLERFSADSTPDEFCDAAEEMTH CGIQEEVEVVRIDGKKLWVKIVLEKRKGRFTKLIEAMTKLGLQPVHTSLTTSKGAFLISSCVETVHVDSEMAQRIKDLLLQVIRVI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G21330	bHLH	bHLH022, DYT1	DYSFUNCTIONAL TAPETUM 1, basic...		Lus10007618 [exp]	0	1
AT5G08640		ATFLS1, FLS	flavonol synthase 1 (.1.2)		Lus10025619 [exp]	2.2	0.9703
AT1G18790		AtRKD1, RKD1	RWP-RK domain containing 1, RW...		Lus10019100 [exp]	3.2	0.9703
AT1G61680		ATTPS14	terpene synthase 14 (.1.2)		Lus10040632 [exp]	3.9	0.9703
AT2G32300		UCC1	uclacyanin 1 (.1)		Lus10007025 [exp]	4.5	0.9636
AT4G33550			Bifunctional inhibitor/lipid-t...		Lus10005010 [exp]	5.0	0.9580
AT1G09910			Rhamnogalacturonate lyase fami...		Lus10033183 [exp]	5.1	0.8041
AT5G67210		IRX15-L	IRX15-LIKE, Protein of unknown...		Lus10019326 [exp]	5.7	0.7388
AT1G09790		COBL6	COBRA-like protein 6 precursor...		Lus10016188 [exp]	6.0	0.9068
					Lus10000749 [exp]	8.4	0.8961
AT1G27060			Regulator of chromosome conden...		Lus10012474 [exp]	8.5	0.8046

Compare expression of checked genes

Lus10007618 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.