Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G55890 313 / 2e-104 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G13160 312 / 4e-104 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G13150 244 / 8e-76 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G80150 161 / 1e-45 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G36680 140 / 1e-37 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G61870 135 / 5e-36 PPR336 pentatricopeptide repeat 336 (.1) AT2G18520 133 / 6e-35 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G11630 129 / 2e-33 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G16420 112 / 5e-27 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT1G74580 104 / 3e-24 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018394 [exp] 669 / 0 AT3G13160 327 / 8e-110 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10020073 [exp] 301 / 2e-99 AT1G55890 313 / 6e-104 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10018393 [exp] 247 / 8e-79 AT3G13160 290 / 1e-95 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10007620 [exp] 244 / 1e-77 AT3G13160 298 / 2e-98 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10024724 [exp] 150 / 2e-41 AT1G80150 503 / 6e-179 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10032338 [exp] 149 / 4e-41 AT1G80150 506 / 8e-180 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10019119 [exp] 142 / 6e-39 AT1G80150 450 / 1e-158 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10024025 [exp] 141 / 3e-38 AT4G36680 475 / 1e-167 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10028054 [exp] 139 / 7e-37 AT1G80150 437 / 8e-152 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G029900 [exp] 373 / 6e-128 AT3G13160 377 / 1e-129 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.011G032400 [exp] 360 / 6e-123 AT3G13160 343 / 4e-116 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.011G032500 [exp] 360 / 6e-123 AT3G13160 358 / 9e-122 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.011G032312 [exp] 335 / 4e-113 AT3G13160 352 / 3e-119 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.004G030000 [exp] 270 / 5e-88 AT3G13160 287 / 2e-94 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.003G062700 [exp] 157 / 3e-44 AT1G80150 541 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.001G171300 [exp] 153 / 1e-42 AT1G80150 496 / 8e-176 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.007G028400 [exp] 148 / 7e-41 AT4G36680 477 / 2e-168 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.005G125400 [exp] 135 / 4e-36 AT4G36680 478 / 2e-168 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.004G018000 [exp] 131 / 2e-34 AT1G61870 421 / 4e-146 pentatricopeptide repeat 336 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10007619 pacid=23140299 polypeptide=Lus10007619 locus=Lus10007619.g ID=Lus10007619.BGIv1.0 annot-version=v1.0 ATGGCGACTATCTCCCGCACCCTCCGTCGCGCTTTCTCGGCCGCAACCGCATCCGCCACAACCACCTCCGAGCCCAGCCTCAAGGCGCTATCCCGGAGCA TTCACAAGGAACGAAGCCTGAAGCGGTTGGTGGAGAAGTTCAAGCAGTTCTCACTCGAGCCCCGATTCCGCACCAAGATCGGCATTTACGAAGATGTAGT CCGCCGCCTCACATCGGCCAAGTGCTTCAACTGGGTGGAGGAGATCCTTGAGGATCAGAAGCAGTTCAAGGATATGTCCAAGGAAGGGTTCAACGCCCGA TTGATCACTCTGTACGGGAGAGCCGGGATGTTCCACAAAGCACGCCAGTTGTTCGACGAAATGCCTGGAAGAAATTGTGAGCGTACTTCCTTGTCTTTCA ATGCACTTCTGTCTGCTTGTTTGAATTCGAAGAAGGCCGATAAGGTCGAGGAGCTCTTCAAAGGTTTGTCCAAGGAAATTGGGGTTGAACCCGATGTGGT GTCTTACAATACTTTGATGAAGGCTTATTGTGAGATGGATAAGCTTGATTTAGCGTTGGAGCTGATTAAGGAAATGGAAGGGAAAATTTTGGCGCCTAAT TTGGTTACTTACAACACTCTGTTACATGCTCTGTATGAAAATGATAAGCTTGATGATGGTGAAAGAATCTGGGGGCAAATGTTGGAGAAGGGTGTGTCAC CTGATATCCGATCCTACAATGCGAAGCTGCTCGGGTCGAAAGCATCCGATGCAGTCGAACTGATCGAAGAAATGAAGAAGAAAGAGATCAAGCCCGATGC AATTAGCTTCAGCTGTTTGATCAAGGCCTTCATAACGGGTGACGATCTGGAAGGAGTCAAGAAGTGGTATGGTGAGATGCGTGGAGCTGGATTCAAGCCT GATAAGTTTGGGTATGGAAAGCTGCTGAATTTCGCTCGGGGGAAGAGTGATTCAGCGTTTGCTTACGAGGTTGCTAAGGATGCATTGAATGGGAAGAGAC TTGTCGGTGAAGATTTGTTGCAGAAAGTGGTGGATTTGCTGGCTGTCGAGAAGAAGGTTACAGAAGCTGAGGAGATTGTGGAGCTTGGTAAGAGTAATGG GTACTTCCAGTATAAGCTCAAGTTTCCTGCTACTGAAGAGTGA
AA sequence Show only first row Show all	>Lus10007619 pacid=23140299 polypeptide=Lus10007619 locus=Lus10007619.g ID=Lus10007619.BGIv1.0 annot-version=v1.0 MATISRTLRRAFSAATASATTTSEPSLKALSRSIHKERSLKRLVEKFKQFSLEPRFRTKIGIYEDVVRRLTSAKCFNWVEEILEDQKQFKDMSKEGFNAR LITLYGRAGMFHKARQLFDEMPGRNCERTSLSFNALLSACLNSKKADKVEELFKGLSKEIGVEPDVVSYNTLMKAYCEMDKLDLALELIKEMEGKILAPN LVTYNTLLHALYENDKLDDGERIWGQMLEKGVSPDIRSYNAKLLGSKASDAVELIEEMKKKEIKPDAISFSCLIKAFITGDDLEGVKKWYGEMRGAGFKP DKFGYGKLLNFARGKSDSAFAYEVAKDALNGKRLVGEDLLQKVVDLLAVEKKVTEAEEIVELGKSNGYFQYKLKFPATEE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G13160			Tetratricopeptide repeat (TPR)...		Lus10007619 [exp]	0	1
AT5G61030		GR-RBP3	glycine-rich RNA-binding prote...		Lus10034685 [exp]	1.4	0.9640
AT1G30580			GTP binding (.1)		Lus10038543 [exp]	4.9	0.9251
AT5G60960		PNM1	PPR protein localized to the n...		Lus10034673 [exp]	5.7	0.9566
AT2G15000			unknown protein		Lus10026596 [exp]	6.7	0.9358
AT4G23620			Ribosomal protein L25/Gln-tRNA...		Lus10000590 [exp]	7.3	0.9243
AT3G45770			Polyketide synthase, enoylredu...		Lus10020160 [exp]	9.5	0.9162
AT3G09630			Ribosomal protein L4/L1 family...		Lus10026476 [exp]	11.6	0.9448
AT5G61030		GR-RBP3	glycine-rich RNA-binding prote...		Lus10017852 [exp]	12.2	0.9232
AT5G66860			Ribosomal protein L25/Gln-tRNA...		Lus10009338 [exp]	12.8	0.9425
AT2G40290			Eukaryotic translation initiat...		Lus10017435 [exp]	13.0	0.9420

Compare expression of checked genes

Lus10007619 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.