Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G13160 295 / 2e-97 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G55890 275 / 2e-89 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G13150 261 / 3e-82 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G80150 166 / 1e-47 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G18520 154 / 1e-42 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G36680 152 / 7e-42 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G61870 143 / 8e-39 PPR336 pentatricopeptide repeat 336 (.1) AT1G11630 127 / 6e-33 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G12700 123 / 2e-30 RPF1 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) AT1G62590 120 / 1e-29 pentatricopeptide (PPR) repeat-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018393 [exp] 673 / 0 AT3G13160 290 / 1e-95 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10020073 [exp] 303 / 4e-100 AT1G55890 313 / 6e-104 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10007619 [exp] 259 / 2e-83 AT3G13160 341 / 2e-115 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10018394 [exp] 256 / 6e-82 AT3G13160 327 / 8e-110 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10032338 [exp] 155 / 3e-43 AT1G80150 506 / 8e-180 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10024724 [exp] 152 / 4e-42 AT1G80150 503 / 6e-179 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10028054 [exp] 151 / 4e-41 AT1G80150 437 / 8e-152 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10019119 [exp] 148 / 5e-41 AT1G80150 450 / 1e-158 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10024025 [exp] 139 / 2e-37 AT4G36680 475 / 1e-167 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G030000 [exp] 364 / 1e-124 AT3G13160 287 / 2e-94 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.004G029900 [exp] 333 / 3e-112 AT3G13160 377 / 1e-129 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.011G032400 [exp] 318 / 2e-106 AT3G13160 343 / 4e-116 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.011G032500 [exp] 310 / 4e-103 AT3G13160 358 / 9e-122 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.011G032312 [exp] 310 / 8e-103 AT3G13160 352 / 3e-119 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.003G062700 [exp] 176 / 5e-51 AT1G80150 541 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.001G171300 [exp] 169 / 2e-48 AT1G80150 496 / 8e-176 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.007G028400 [exp] 147 / 2e-40 AT4G36680 477 / 2e-168 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.004G018000 [exp] 137 / 2e-36 AT1G61870 421 / 4e-146 pentatricopeptide repeat 336 (.1) Potri.005G125400 [exp] 136 / 3e-36 AT4G36680 478 / 2e-168 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10007620 pacid=23140323 polypeptide=Lus10007620 locus=Lus10007620.g ID=Lus10007620.BGIv1.0 annot-version=v1.0 ATGAGCAAAGCTTCGCCGTCCTCCTCCGTCTACCGTCGCCTTCACGGCATCTTTGATCCAGCAGTAACCACCCCATCCGCCGCCGCTGCAGTATCTACTC AACAATCGTCGGCACCCCGCACCAATCCCAGCTCACTCCAGAAGATGGTAGTGAGATTCAAGCAGTCATCAGAGAAGCAGGACTTCCGATCCCGGTACGA CGTGTATCTCAACACGGCCAGGCGTCTAGCCAAGTACGGGAAGCAACCCTTGATAGAAGAGATCATCAACCACCAAAAAAAATTCGAAGAAATCACATCG GAGCCGTTCGTGTCTCGCCTCATCGTCGTCTACGGGAAAGTCGGTATGTTTAAAAACGCACGTAATCTGTTCGACGAAATGCCTAGCTTTGATTGCCCTC AGACTGTTTACTCCTTCAATGCCCTGCTCTCAGCTTGTATCGACTGTAGCGATTTTGATGAATTCAACAGCATTGTGAAGGAATTGCCGCCCAAATTAGG GATCACTTTAGATGTAGTTTCGTATAACACGATCATGAAAGGTTTGTGCAAGATGGGTGCTTTGGACTCTGCTGCTTTGGTAATCGATCAGATGGTGAAG AAAGGTGTAAACCCAAGTTTAGTCACGTTTAACACGTTGCTAAATGCGTTCTACGTTAACGAGAGGTTCGCTGATGGTGAGTCCATTTGGAAGAGAATGA TGGAAATGAATGTTTCTGATTCTGTTTCCCCTGATGTTAGAAGCTACAATGCTCGACTTCTTGGGTTGGCATTGGAAAACAGGATGGAAGAAGCAGAGAA TCTGGTTAACGAGATGGGTTCGAAAGGGATCAAAACCGATGTGCACAGCTTCATTGCGATGATTAAAGGCTGTGTGAAAGTCGGCGACTTGGAAGGCGCA AAGCGTTGGTATGAGGAGATTCAGAAGCGTGAGATTGTAATGAATAATGCCGTTTTCTACACTCTGGTTCCGTTTCTCTGCGAGAATGGCGATTTGCAGG TTGCTTTCGAAGTGTGTCGAGGCTTTTTAAGTGGGAAGGTTGCTGTCGATGGGAACATAGTGCAGTCTGTGGTTGATGGGTTGGTGAAAGTCGGGAGAGT TGAAGATGCTGAGGAGCTTGTGAAGCTTGGTAGTGGTGGCAGGTACAAGCTCGTCGTTCGCTGA
AA sequence Show only first row Show all	>Lus10007620 pacid=23140323 polypeptide=Lus10007620 locus=Lus10007620.g ID=Lus10007620.BGIv1.0 annot-version=v1.0 MSKASPSSSVYRRLHGIFDPAVTTPSAAAAVSTQQSSAPRTNPSSLQKMVVRFKQSSEKQDFRSRYDVYLNTARRLAKYGKQPLIEEIINHQKKFEEITS EPFVSRLIVVYGKVGMFKNARNLFDEMPSFDCPQTVYSFNALLSACIDCSDFDEFNSIVKELPPKLGITLDVVSYNTIMKGLCKMGALDSAALVIDQMVK KGVNPSLVTFNTLLNAFYVNERFADGESIWKRMMEMNVSDSVSPDVRSYNARLLGLALENRMEEAENLVNEMGSKGIKTDVHSFIAMIKGCVKVGDLEGA KRWYEEIQKREIVMNNAVFYTLVPFLCENGDLQVAFEVCRGFLSGKVAVDGNIVQSVVDGLVKVGRVEDAEELVKLGSGGRYKLVVR

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G13160			Tetratricopeptide repeat (TPR)...		Lus10007620 [exp]	0	1
AT5G43390			Uncharacterised conserved prot...		Lus10021875 [exp]	1.0	0.9389
AT4G05400			copper ion binding (.1.2)		Lus10008331 [exp]	1.7	0.9324
AT1G61790			Oligosaccharyltransferase comp...		Lus10007647 [exp]	3.7	0.9350
AT2G20710			Tetratricopeptide repeat (TPR)...		Lus10018588 [exp]	4.0	0.9245
AT2G21090			Pentatricopeptide repeat (PPR-...		Lus10005064 [exp]	7.3	0.9060
AT2G47550			Plant invertase/pectin methyle...		Lus10020680 [exp]	7.5	0.9038
AT3G17130			Plant invertase/pectin methyle...		Lus10016319 [exp]	9.3	0.8769
AT3G28720			unknown protein		Lus10015362 [exp]	9.8	0.9012
AT5G40660			ATP12 protein-related (.1)		Lus10009910 [exp]	10.4	0.9037
AT4G02330		AtPME41, ATPMEP...	pectin methylesterase 41, Plan...		Lus10020679 [exp]	12.0	0.9003

Compare expression of checked genes

Lus10007620 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.