Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G16740 191 / 8e-58 ATTPS03 terpene synthase 03 (.1.2) AT4G16730 184 / 7e-54 AtTPS02 terpene synthase 02 (.1) AT2G24210 182 / 5e-53 AtTPS10 terpene synthase 10 (.1) AT3G25820 177 / 3e-52 ATTPS-CIN "terpene synthase-like sequence-1,8-cineole", terpene synthase-like sequence-1,8-cineole (.1.2) AT5G23960 179 / 9e-52 ATTPS21 terpene synthase 21 (.1.2) AT1G61680 179 / 1e-51 ATTPS14 terpene synthase 14 (.1.2) AT3G25830 177 / 7e-51 ATTPS-CIN "terpene synthase-like sequence-1,8-cineole", terpene synthase-like sequence-1,8-cineole (.1) AT3G25810 172 / 3e-49 Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) AT3G14490 129 / 2e-33 Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) AT1G70080 127 / 1e-32 Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018392 [exp] 551 / 0 AT1G61680 350 / 1e-113 terpene synthase 14 (.1.2) Lus10000231 [exp] 378 / 6e-130 AT1G61680 348 / 8e-115 terpene synthase 14 (.1.2) Lus10018280 [exp] 379 / 6e-126 AT5G45170 410 / 1e-136 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Lus10035240 [exp] 360 / 5e-122 AT1G61680 372 / 5e-123 terpene synthase 14 (.1.2) Lus10031590 [exp] 188 / 2e-55 AT5G23960 378 / 3e-125 terpene synthase 21 (.1.2) Lus10018501 [exp] 187 / 2e-54 AT4G16740 413 / 1e-137 terpene synthase 03 (.1.2) Lus10039713 [exp] 186 / 7e-54 AT4G16740 409 / 4e-136 terpene synthase 03 (.1.2) Lus10040043 [exp] 184 / 2e-53 AT5G23960 329 / 7e-106 terpene synthase 21 (.1.2) Lus10018500 [exp] 181 / 3e-52 AT4G16740 419 / 1e-140 terpene synthase 03 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G030400 [exp] 261 / 2e-83 AT1G61680 466 / 8e-160 terpene synthase 14 (.1.2) Potri.004G030200 [exp] 256 / 1e-81 AT1G61680 465 / 2e-159 terpene synthase 14 (.1.2) Potri.011G032300 [exp] 251 / 1e-80 AT1G61680 350 / 1e-115 terpene synthase 14 (.1.2) Potri.015G085500 [exp] 220 / 1e-67 AT5G23960 456 / 1e-155 terpene synthase 21 (.1.2) Potri.015G032100 [exp] 219 / 3e-67 AT5G23960 444 / 8e-151 terpene synthase 21 (.1.2) Potri.019G023006 [exp] 202 / 2e-60 AT3G25830 540 / 0.0 "terpene synthase-like sequence-1,8-cineole", terpene synthase-like sequence-1,8-cineole (.1) Potri.007G118600 [exp] 197 / 2e-58 AT4G16740 462 / 3e-157 terpene synthase 03 (.1.2) Potri.019G023008 [exp] 196 / 2e-58 AT3G25830 535 / 0.0 "terpene synthase-like sequence-1,8-cineole", terpene synthase-like sequence-1,8-cineole (.1) Potri.007G119700 [exp] 194 / 6e-57 AT4G16740 438 / 8e-147 terpene synthase 03 (.1.2) Potri.019G022338 [exp] 192 / 2e-56 AT3G25830 483 / 8e-165 "terpene synthase-like sequence-1,8-cineole", terpene synthase-like sequence-1,8-cineole (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01397 [flax] [poplar] Terpene_synth Terpene synthase, N-terminal domain CL0613 [flax] [poplar] Terp_synthase PF03936 [flax] [poplar] Terpene_synth_C Terpene synthase family, metal binding domain
Representative CDS sequence Show only first row Show all	>Lus10007622 pacid=23140328 polypeptide=Lus10007622 locus=Lus10007622.g ID=Lus10007622.BGIv1.0 annot-version=v1.0 ATGGAGAGGCATACACAAAGACTCGAAGAAGCACGAATGATGTTCAAGAAGCAAAAGGAAGAAGGAAACTCCATGGAAATTCTGGTAATGATTGATGCCC TTCAACGCCTAGGCTTAGACTACCACTTCGAGCAAGACATAGCCATGGTCTTGGACAAGCTTTACTATCATCAAATGACGGCGCCGCCGACAATATCCTC CGCCGCCGGCGCCGACCTTTCCCACACGTCGTTGGGATTTCGGTTGTTAAGACAGCATGGTTATAATGTTCCTTCAGATGTGTTTCACAAATTCACGAAC GAGGAAGGACGTCGAAAGGTCATGGAAGGCAACGATACGAGGGGACTGATCGAACTGTACGAAGCATCGTTCTGGGGCACGAAAGGTGAGAACGCTCTCT TCGAGGGTGGGGAACTCAGTGCTCGAATGCTATCGGGACGAAATTCGAACGATCTCAATGCGAATTTCACCCTGAGTCATCCTCTTCATAGAAGCTTACC CAAATTCAACATGAAGAACTATCTCAACATCTTCAATAATGGCCATGGTTACTACTACAATGATGCTCTTGCTGATCTAGCAAGGTTGGACTTCAATGTT AACCAATCAATTCACAGGGAAGAAGTCATCCAAGTTTCGAGGTGGTGGAAAGAAGTGGGGCTCGCGGAAGAGCTGACATTTGCTAGGAACCAACCGTTGA AGTTTTATATGTGGTCCCTGGCAACCTTGCTGGAACCCAAATTCTCGGGAGAAAGAGTCGAGATGACTAAGCCTGCTTCGTTTGTGTACCTCATAGACAA CATCTTTGACATTTACGGGTCGCTTGATGAACTAGTTCTCTTCACTGAAATCGTAGACAAATGGGACATCGCAGCCGCAGAACATCTTCCGCATTACATG AGCAAATGTTTCATGGCACTCCGACAAATTCACTAA
AA sequence Show only first row Show all	>Lus10007622 pacid=23140328 polypeptide=Lus10007622 locus=Lus10007622.g ID=Lus10007622.BGIv1.0 annot-version=v1.0 MERHTQRLEEARMMFKKQKEEGNSMEILVMIDALQRLGLDYHFEQDIAMVLDKLYYHQMTAPPTISSAAGADLSHTSLGFRLLRQHGYNVPSDVFHKFTN EEGRRKVMEGNDTRGLIELYEASFWGTKGENALFEGGELSARMLSGRNSNDLNANFTLSHPLHRSLPKFNMKNYLNIFNNGHGYYYNDALADLARLDFNV NQSIHREEVIQVSRWWKEVGLAEELTFARNQPLKFYMWSLATLLEPKFSGERVEMTKPASFVYLIDNIFDIYGSLDELVLFTEIVDKWDIAAAEHLPHYM SKCFMALRQIH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G16740		ATTPS03	terpene synthase 03 (.1.2)		Lus10007622 [exp]	0	1

Compare expression of checked genes

Lus10007622 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.