Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G61690 296 / 1e-91 phosphoinositide binding (.1) AT1G20110 66 / 2e-11 RING/FYVE/PHD zinc finger superfamily protein (.1) AT3G47660 54 / 7e-08 Regulator of chromosome condensation (RCC1) family protein (.1) AT3G43230 54 / 1e-07 RING/FYVE/PHD-type zinc finger family protein (.1) AT3G14270 53 / 2e-07 FAB1B FORMS APLOID AND BINUCLEATE CELLS 1B, phosphatidylinositol-4-phosphate 5-kinase family protein (.1) AT5G12350 51 / 1e-06 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1) AT1G69710 50 / 1e-06 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1) AT1G65920 50 / 1e-06 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1) AT4G14368 50 / 2e-06 Regulator of chromosome condensation (RCC1) family protein (.1) AT4G33240 50 / 2e-06 FAB1A FORMS APLOID AND BINUCLEATE CELLS 1A, 1-phosphatidylinositol-4-phosphate 5-kinases;zinc ion binding;1-phosphatidylinositol-3-phosphate 5-kinases (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018391 [exp] 509 / 1e-172 AT1G61690 838 / 0.0 phosphoinositide binding (.1) Lus10017277 [exp] 67 / 5e-12 AT1G20110 654 / 0.0 RING/FYVE/PHD zinc finger superfamily protein (.1) Lus10013571 [exp] 67 / 8e-12 AT1G20110 650 / 0.0 RING/FYVE/PHD zinc finger superfamily protein (.1) Lus10027659 [exp] 55 / 5e-08 AT3G43230 654 / 0.0 RING/FYVE/PHD-type zinc finger family protein (.1) Lus10037192 [exp] 53 / 2e-07 AT1G69710 986 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1) Lus10038127 [exp] 52 / 4e-07 AT4G33240 1429 / 0.0 FORMS APLOID AND BINUCLEATE CELLS 1A, 1-phosphatidylinositol-4-phosphate 5-kinases;zinc ion binding;1-phosphatidylinositol-3-phosphate 5-kinases (.1.2.3) Lus10007320 [exp] 52 / 4e-07 AT1G29800 709 / 0.0 RING/FYVE/PHD-type zinc finger family protein (.1.2) Lus10029271 [exp] 52 / 4e-07 AT1G29800 713 / 0.0 RING/FYVE/PHD-type zinc finger family protein (.1.2) Lus10036737 [exp] 51 / 8e-07 AT1G69710 974 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G032200 [exp] 336 / 2e-105 AT1G61690 773 / 0.0 phosphoinositide binding (.1) Potri.004G030500 [exp] 306 / 2e-94 AT1G61690 634 / 0.0 phosphoinositide binding (.1) Potri.002G018900 [exp] 61 / 4e-10 AT1G20110 566 / 0.0 RING/FYVE/PHD zinc finger superfamily protein (.1) Potri.005G242700 [exp] 61 / 4e-10 AT1G20110 555 / 0.0 RING/FYVE/PHD zinc finger superfamily protein (.1) Potri.018G064200 [exp] 58 / 5e-09 AT3G43230 649 / 0.0 RING/FYVE/PHD-type zinc finger family protein (.1) Potri.006G135800 [exp] 57 / 6e-09 AT3G43230 649 / 0.0 RING/FYVE/PHD-type zinc finger family protein (.1) Potri.003G072300 [exp] 56 / 3e-08 AT3G14270 2157 / 0.0 FORMS APLOID AND BINUCLEATE CELLS 1B, phosphatidylinositol-4-phosphate 5-kinase family protein (.1) Potri.011G071900 [exp] 54 / 1e-07 AT1G29800 744 / 0.0 RING/FYVE/PHD-type zinc finger family protein (.1.2) Potri.001G163200 [exp] 54 / 1e-07 AT3G14270 2134 / 0.0 FORMS APLOID AND BINUCLEATE CELLS 1B, phosphatidylinositol-4-phosphate 5-kinase family protein (.1) Potri.017G139600 [exp] 53 / 2e-07 AT1G65920 937 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0390 [flax] [poplar] zf-FYVE-PHD PF01363 [flax] [poplar] FYVE FYVE zinc finger
Representative CDS sequence Show only first row Show all	>Lus10007623 pacid=23140307 polypeptide=Lus10007623 locus=Lus10007623.g ID=Lus10007623.BGIv1.0 annot-version=v1.0 ATGCTGGAGAAGATCGGATTGCCGCCGAAGCCCTCACTGAGAGGAAACACTTGGGTGGTGGACGCCACGCATTGCCAAGGATGCGCTTCTCAGTTCACCT TTATCAATCGCAAGCATCACTGTCGGAGATGCGGCGGTCTGTTCTGCGGAACCTGTACTCAGCAGAGAATGGCACTGAGAGGCCAAGGAGATTCTCCCGT ACGAATCTGCGATCCGTGCAAGAAGCTGGAGGAAGCTGCTCGATTCGAGCTTCGTCATGGATATAAGAACAGGACAGCTAAAGCTAGTTCGAAATCGTTA CAGAGAGATGAGGATGAAGTGTTGAATCAGATTCTAGGAGGTGATGGATTAGTGGATTCGAAGCTGAGTCGAGGGAGTAGTAGTAGCAGTGCTTCATGTT CGACTAGGGATAACATGGATCATGGTGGGGGAGAAATGAGTAGAAGCTATTCTGTTGATCATGTTGAGAAGGAATCGTTAGTGACTACTACTCCTGAGGA GTTAAGACAGCGGGCAGTGGAGGAGAAAGGGAAGTACAAGACATTGAAAGCGGCAGGAAAATCAGAGGAGGCGCTGAAGGCGTTTAAGCGAGGGAAGGAG TTAGAGAGGCAGGCTGATGCATTGGAGATAACAATAAGAAGAAACCGCAGGAAGAGCGAGAATCGGAAGAAGGATGTAGTAATGCCGAGAGAGAAGGATA ATGACATTCTTGCTGAACTCAAGGGCATAGGGTTGTCTGAGATGGATCTGCAAGAGAAAGAGAAGAAGCCGGCGAATTTGAGTTTGGAAGGTGAGTTGTT TTCCCTTCTTGGAGATGTGTCTCAAAGGAAAACTAAAGAAAGTGGAATTGGGTTAGACAAATCTGGGGTAATTGCTCATAAGAGAAAGGCTCTGATGCTG AAGCGAGAAGGAAAGCTTGATGAAGCGAAGGAAGAGCTGAAGAAGGCTAAGCTCTTGGAGAAGGAGCTTGAAGAGAAGGAGCTGCTCGGCAGGAGCTGTT TGGAGGTGGAGCTGAAGATGATTCTGATGATGAGATAG
AA sequence Show only first row Show all	>Lus10007623 pacid=23140307 polypeptide=Lus10007623 locus=Lus10007623.g ID=Lus10007623.BGIv1.0 annot-version=v1.0 MLEKIGLPPKPSLRGNTWVVDATHCQGCASQFTFINRKHHCRRCGGLFCGTCTQQRMALRGQGDSPVRICDPCKKLEEAARFELRHGYKNRTAKASSKSL QRDEDEVLNQILGGDGLVDSKLSRGSSSSSASCSTRDNMDHGGGEMSRSYSVDHVEKESLVTTTPEELRQRAVEEKGKYKTLKAAGKSEEALKAFKRGKE LERQADALEITIRRNRRKSENRKKDVVMPREKDNDILAELKGIGLSEMDLQEKEKKPANLSLEGELFSLLGDVSQRKTKESGIGLDKSGVIAHKRKALML KREGKLDEAKEELKKAKLLEKELEEKELLGRSCLEVELKMILMMR

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G61690			phosphoinositide binding (.1)		Lus10007623 [exp]	0	1
AT2G36350			Protein kinase superfamily pro...		Lus10020571 [exp]	2.8	0.8491
AT2G32910			DCD (Development and Cell Deat...		Lus10004128 [exp]	5.5	0.8032
AT3G57890			Tubulin binding cofactor C dom...		Lus10023821 [exp]	14.8	0.7885
AT1G07510		FTSH10	FTSH protease 10 (.1)		Lus10004973 [exp]	15.1	0.7725
AT3G49500		SDE1, SGS2, RDR...	SUPPRESSOR OF GENE SILENCING 2...		Lus10002017 [exp]	17.1	0.7652
AT5G57710			Double Clp-N motif-containing ...		Lus10015511 [exp]	18.3	0.7323
AT2G17030			F-box family protein with a do...		Lus10023984 [exp]	18.5	0.7703
AT3G05530		ATS6A.2, RPT5A	regulatory particle triple-A A...		Lus10029887 [exp]	20.0	0.7556
AT3G18310			unknown protein		Lus10023992 [exp]	25.1	0.7697
AT4G02720			unknown protein		Lus10042601 [exp]	25.8	0.7698

Compare expression of checked genes

Lus10007623 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.