Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G16730 325 / 7e-105 AtTPS02 terpene synthase 02 (.1) AT4G16740 325 / 2e-104 ATTPS03 terpene synthase 03 (.1.2) AT3G25830 309 / 9e-98 ATTPS-CIN "terpene synthase-like sequence-1,8-cineole", terpene synthase-like sequence-1,8-cineole (.1) AT3G25820 309 / 9e-98 ATTPS-CIN "terpene synthase-like sequence-1,8-cineole", terpene synthase-like sequence-1,8-cineole (.1.2) AT2G24210 305 / 3e-96 AtTPS10 terpene synthase 10 (.1) AT3G25810 304 / 7e-96 Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) AT1G61680 236 / 2e-70 ATTPS14 terpene synthase 14 (.1.2) AT1G70080 192 / 7e-54 Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) AT5G23960 188 / 8e-53 ATTPS21 terpene synthase 21 (.1.2) AT3G14520 180 / 2e-49 AtTPS18 Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018390 [exp] 954 / 0 AT4G16730 330 / 5e-107 terpene synthase 02 (.1) Lus10039713 [exp] 323 / 9e-103 AT4G16740 409 / 4e-136 terpene synthase 03 (.1.2) Lus10033643 [exp] 318 / 8e-101 AT4G16730 356 / 2e-115 terpene synthase 02 (.1) Lus10018501 [exp] 317 / 1e-100 AT4G16740 413 / 1e-137 terpene synthase 03 (.1.2) Lus10018500 [exp] 313 / 2e-99 AT4G16740 419 / 1e-140 terpene synthase 03 (.1.2) Lus10025922 [exp] 286 / 5e-89 AT3G25810 353 / 3e-114 Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) Lus10038179 [exp] 286 / 7e-89 AT3G25810 351 / 2e-113 Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) Lus10006356 [exp] 279 / 6e-86 AT3G25820 371 / 3e-121 "terpene synthase-like sequence-1,8-cineole", terpene synthase-like sequence-1,8-cineole (.1.2) Lus10006355 [exp] 276 / 5e-85 AT2G24210 361 / 7e-117 terpene synthase 10 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G031800 [exp] 570 / 0 AT3G25830 382 / 5e-126 "terpene synthase-like sequence-1,8-cineole", terpene synthase-like sequence-1,8-cineole (.1) Potri.019G023006 [exp] 382 / 3e-126 AT3G25830 540 / 0.0 "terpene synthase-like sequence-1,8-cineole", terpene synthase-like sequence-1,8-cineole (.1) Potri.019G023008 [exp] 374 / 2e-123 AT3G25830 535 / 0.0 "terpene synthase-like sequence-1,8-cineole", terpene synthase-like sequence-1,8-cineole (.1) Potri.007G118600 [exp] 349 / 1e-113 AT4G16740 462 / 3e-157 terpene synthase 03 (.1.2) Potri.001G308200 [exp] 345 / 6e-112 AT3G25810 499 / 4e-171 Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) Potri.019G022338 [exp] 343 / 3e-111 AT3G25830 483 / 8e-165 "terpene synthase-like sequence-1,8-cineole", terpene synthase-like sequence-1,8-cineole (.1) Potri.017G041700 [exp] 343 / 5e-111 AT3G25810 432 / 3e-145 Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) Potri.001G308300 [exp] 343 / 6e-111 AT3G25830 507 / 4e-174 "terpene synthase-like sequence-1,8-cineole", terpene synthase-like sequence-1,8-cineole (.1) Potri.007G119700 [exp] 316 / 5e-100 AT4G16740 438 / 8e-147 terpene synthase 03 (.1.2) Potri.011G142800 [exp] 291 / 1e-91 AT5G23960 405 / 2e-135 terpene synthase 21 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01397 [flax] [poplar] Terpene_synth Terpene synthase, N-terminal domain CL0613 [flax] [poplar] Terp_synthase PF03936 [flax] [poplar] Terpene_synth_C Terpene synthase family, metal binding domain
Representative CDS sequence Show only first row Show all	>Lus10007624 pacid=23140319 polypeptide=Lus10007624 locus=Lus10007624.g ID=Lus10007624.BGIv1.0 annot-version=v1.0 ATGGCGATGGATGAAATTCTAAGGAGGTCAGCAAATTACAAACCCAACACGTGGGAATACGGCTTTCTACAGTCTCTTTCTACCCAATACGACTATGGTC ATTTACTCATGGTGAAGCTAAAAGAGGAAGTGAAGATGATCTTTCACGATGCAACCGATTTAACGGCCAAGCTAGAGCTCGTCGACACGACGAGCAAGGT AGGGCTAGCCGGCTTCTTCCAGGAGGAAATCAAAGGGGCTCTAGATTTTGTGGCGCTCACCGTTCGAGATCCAAGTTCCGTGCTGAGAGAGGATCTGTAT CTTTGCGCTTTGTCCTTCAGACTCCTCAGGCAGCATGGCTATCGAGTTTCTCAAGATATGTTTAGCGAGTTCGTCGATGAAACGACTGGTAGTTTCGTCG TTGGCAAGTGCATCGAGGATGTTAAGGGACTGGTGGAGTTGTTCGAGGCATCGCATATGGGGTCGGAGATGGAGGATACTTTGGAGGAAGCGAGTCGATT CTCGGCCGGAATCTTGAAGGGCAAGTATCTAAACTTATGTCAACTTGACAAGAGTACCCTTGCTAGGAGTGTGGCCCACGCTCTTGAGCTGCCCATCCAT TGGAGCGTGGGGTGGTTTGATGTGAAGTGGCAAATTTCAGCCAATGAAAAAGAGAGGATTAATGGACATTATTATAAGGCTTTGATAGACTTGGCGAAAG TCAACTTCAATGTGGTCCAATCCGGACTCCAAAAGGATTTGAAGCAAATATCAAGATGGTGGAAGGATTTTGGTCTAATTAAGAAGTTACACTTTGCAAG GGATCGAGTCGTCGAGAGCTTTTTATGTGCAGTGGGACTAACGACAAAGCTGGAGCACACCAACTTTAGAAAACATCTCACAAAAGTAGTCATCATGATA TTAATCATCGACGATGTCTATGATGTTTATGGCTCTCTCGACGAACTAGAGCAATTCACCATCGCCATTGACAAATGGGATGAGAAGGAAGCCGAGAACC TGCCCGAATGTATGAACGCATGCTTTCAGTCGCTTCGCGCAATCACCCACGAAATTTCGAGCAATATCGAGACCGAGAAAGGGTGGAACCGACCCAACCA TGTGCATCTTCACCTCCAAAGAGTGTGGGGAGATTTTTGTAAAGCGATGTTGGTAGAAGCAAAGTGGCATAGAGAACTGCCGTCTTTGGAAGAGTACTTA AGAAACGGCATCGTTTCATCTTCCGGCACGGTTCTCGCCGTCCATGCGTTTTACTCGGTGATGGACAGTGAAACAGCAGAACAAATGGAAGGGGTTCTGG AGAATGATGATCATAATCTGATTCACAACGTATGCCTTATAATTCGGCTTTGCAATGATCTTGGAACTTCAACGGAAGAGCAAGAGAGAGGAGATCAGAC ACCATCATCAATAACATGTTACATGAGAGAAGCCAACGTCTCCGAGGAGAAAGCCAGGCTACACATGAAAGGGATGATCTCCAAAATTTGGAAGAAAATA AATAGCCATCAGCCAAAGATTCCAATGAAGCTATTTGTGGACATCAGCATCAACATGGCTCGTGTGGTTCATAACTTGTACCGACATGGTGATGGCTTTA ACGGAGGTCAAGACCGTAAGCAAATATTGTCCCTTTTGGTTCATCCACTCTTACTTTGA
AA sequence Show only first row Show all	>Lus10007624 pacid=23140319 polypeptide=Lus10007624 locus=Lus10007624.g ID=Lus10007624.BGIv1.0 annot-version=v1.0 MAMDEILRRSANYKPNTWEYGFLQSLSTQYDYGHLLMVKLKEEVKMIFHDATDLTAKLELVDTTSKVGLAGFFQEEIKGALDFVALTVRDPSSVLREDLY LCALSFRLLRQHGYRVSQDMFSEFVDETTGSFVVGKCIEDVKGLVELFEASHMGSEMEDTLEEASRFSAGILKGKYLNLCQLDKSTLARSVAHALELPIH WSVGWFDVKWQISANEKERINGHYYKALIDLAKVNFNVVQSGLQKDLKQISRWWKDFGLIKKLHFARDRVVESFLCAVGLTTKLEHTNFRKHLTKVVIMI LIIDDVYDVYGSLDELEQFTIAIDKWDEKEAENLPECMNACFQSLRAITHEISSNIETEKGWNRPNHVHLHLQRVWGDFCKAMLVEAKWHRELPSLEEYL RNGIVSSSGTVLAVHAFYSVMDSETAEQMEGVLENDDHNLIHNVCLIIRLCNDLGTSTEEQERGDQTPSSITCYMREANVSEEKARLHMKGMISKIWKKI NSHQPKIPMKLFVDISINMARVVHNLYRHGDGFNGGQDRKQILSLLVHPLLL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G16740		ATTPS03	terpene synthase 03 (.1.2)		Lus10007624 [exp]	0	1
AT4G16730		AtTPS02	terpene synthase 02 (.1)		Lus10018390 [exp]	1.0	0.9750
AT1G69850		NTL1, ATNRT1:2	nitrate transporter 1:2 (.1)		Lus10005417 [exp]	2.0	0.9445
AT1G04730		CTF18	CHROMOSOME TRANSMISSION FIDELI...		Lus10032615 [exp]	3.0	0.9290
AT5G28237			Pyridoxal-5'-phosphate-depende...		Lus10007651 [exp]	3.3	0.8954
AT3G55150		ATEXO70H1	exocyst subunit exo70 family p...		Lus10023455 [exp]	5.9	0.9032
AT1G15360	AP2_ERF	WIN1, SHN1	WAX INDUCER 1, SHINE 1, Integr...		Lus10005716 [exp]	7.0	0.8258
AT2G20870			cell wall protein precursor, p...		Lus10018569 [exp]	7.3	0.9118
AT5G20860			Plant invertase/pectin methyle...		Lus10033621 [exp]	7.7	0.9197
AT1G61390			S-locus lectin protein kinase ...		Lus10031605 [exp]	7.9	0.8446
AT2G33060		AtRLP27	receptor like protein 27 (.1)		Lus10004313 [exp]	11.3	0.8978

Compare expression of checked genes

Lus10007624 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.