Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G21320 380 / 7e-128 HSA32 HEAT-STRESS-ASSOCIATED 32, Aldolase-type TIM barrel family protein (.1) AT4G27240 306 / 2e-97 C2H2ZnF zinc finger (C2H2 type) family protein (.1) AT5G54630 269 / 1e-82 C2H2ZnF zinc finger protein-related (.1) AT1G11490 190 / 3e-54 C2H2ZnF zinc finger (C2H2 type) family protein (.1) AT1G75710 145 / 2e-37 C2H2ZnF C2H2-like zinc finger protein (.1) AT2G29660 115 / 2e-27 C2H2ZnF zinc finger (C2H2 type) family protein (.1) AT1G62520 105 / 5e-25 unknown protein AT4G22560 102 / 7e-24 unknown protein AT4G12450 94 / 3e-21 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018388 [exp] 629 / 0 AT5G54630 336 / 5e-112 zinc finger protein-related (.1) Lus10018387 [exp] 475 / 5e-165 AT4G21320 445 / 2e-159 HEAT-STRESS-ASSOCIATED 32, Aldolase-type TIM barrel family protein (.1) Lus10018389 [exp] 259 / 3e-83 AT5G54630 166 / 4e-50 zinc finger protein-related (.1) Lus10024333 [exp] 166 / 2e-46 AT1G75710 384 / 3e-133 C2H2-like zinc finger protein (.1) Lus10033148 [exp] 155 / 8e-41 AT1G75710 442 / 3e-153 C2H2-like zinc finger protein (.1) Lus10034522 [exp] 153 / 3e-40 AT1G75710 450 / 1e-156 C2H2-like zinc finger protein (.1) Lus10025632 [exp] 153 / 3e-40 AT1G75710 284 / 2e-91 C2H2-like zinc finger protein (.1) Lus10028083 [exp] 149 / 1e-38 AT1G75710 284 / 4e-91 C2H2-like zinc finger protein (.1) Lus10018219 [exp] 117 / 5e-28 AT2G29660 323 / 4e-108 zinc finger (C2H2 type) family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G031600 [exp] 426 / 1e-145 AT4G21320 414 / 3e-147 HEAT-STRESS-ASSOCIATED 32, Aldolase-type TIM barrel family protein (.1) Potri.004G030800 [exp] 317 / 6e-102 AT5G54630 385 / 3e-131 zinc finger protein-related (.1) Potri.001G415600 [exp] 318 / 7e-102 AT5G54630 520 / 0.0 zinc finger protein-related (.1) Potri.011G131300 [exp] 278 / 2e-86 AT5G54630 509 / 3e-179 zinc finger protein-related (.1) Potri.004G031100 [exp] 187 / 4e-56 AT4G21320 173 / 9e-55 HEAT-STRESS-ASSOCIATED 32, Aldolase-type TIM barrel family protein (.1) Potri.005G173400 [exp] 178 / 3e-49 AT1G75710 291 / 3e-94 C2H2-like zinc finger protein (.1) Potri.005G238300 [exp] 169 / 2e-46 AT1G75710 478 / 5e-168 C2H2-like zinc finger protein (.1) Potri.002G087500 [exp] 162 / 1e-43 AT1G75710 294 / 2e-95 C2H2-like zinc finger protein (.1) Potri.002G023200 [exp] 151 / 7e-40 AT1G75710 439 / 1e-152 C2H2-like zinc finger protein (.1) Potri.001G249900 [exp] 137 / 4e-35 AT2G29660 351 / 1e-119 zinc finger (C2H2 type) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0036 [flax] [poplar] TIM_barrel PF02679 [flax] [poplar] ComA (2R)-phospho-3-sulfolactate synthase (ComA)
Representative CDS sequence Show only first row Show all	>Lus10007625 pacid=23140321 polypeptide=Lus10007625 locus=Lus10007625.g ID=Lus10007625.BGIv1.0 annot-version=v1.0 ATGTCGTCGGTGTACTATCACTGGAAGAGCTTCGACGACGAAAACGATGAAGATCGGCCGGAGAAGCCTCGACGCTATGGCGTCACCGAAATGAGAGGTC CTCAGCACAGCTTCCTCAGCCAGAACATGCTCCAGGATATTTTCGAGTCCATGGGACAGTTTGTGGACGGATTGAAGTTCTCCGGAGGTTCACATAGCTT GATGCCGAAATCGTTTCTCAAAGAAGTGATCGACATGGCTCACCGGCACGATGTGTACGTCAGTACGGGAGATTGGGCTGAACATCTGCTACGCAAAGGT CCTTCTGCTTTCAAAGACTATATAGAGGAGTGTAAGAGCATGGGATTCGATACGATTGAGCTGAATATGGAATCACTTGGAGTCCCTGAGGATACCCTCT TGAGATACGTGCGTCTAATCAAGAGTGGTGGACTGAAAGCTAAACCTCAGTTCGCCATCATGTTTAACGAGTCCAATATTCCAGTTTGTGGAAACCGGGC ATTCGGTGCTTACGTGCCACCGGCGCCTCCTCGTTCATCCGGTAATATGTTGGTTTCTGCAGAAGTAGTTGAAGATGTTGATATTCTGATTAGAAGGGCT GAGAGATGCTTAGAAGCTGGGGCAGATATGATCATGATTGATGCTGATGATCTCTGCAAGGATGCTGATCGACTAAGGGCGGATATAGTTGCTAAGATCA TTGGACGACTGGGTATCGAGAAGACCATGTTCGAAGCGTCGAATTCCAGAACTTCTGAGTGGTTTGTCAAGCGTTATGGTCCCAAGATGAGCACTAAAGA AGGGGGGAAACCCAGAGAGTTATGTAAAGTCTGGGGTTCTCTAAAGAAATCGTTCCAGACCTGCAGGCCGGAACCCATGGCTGCTACCGAACCAAGGAAG AGGAGCACATGCAGCTCGGCCTGTTCCAGATCGCTGTCGAATCTGCGAGACGTTATCCATGGAAGCAAACGCCACACTACGGAGTGCCGTGATGATGATG ATGGCAATAAGCCTCCGCCAAATTACAGTCCGAGATCTCTGGGGAGCAGTGATTTCCTCAACGCTGTCTCCTATGATGTAGTACCGAGTGACTCCACCTG TGAGCTGAAAATTACAGGCAAGGTCAGTCCAACTACTCTCACTTCCGGCATCAAGTCGGGGAACGAACCGTCTCCTCCTCGTCGGAAATCGGTTAATGGC GTTGGAAATGAGAAGCCTTCCAGATTCAGGACAGCTCCTGATGTAGAATCTGATGGGCCATCGCCCCTTCAATGCAAGAAATGCAGTGTTCAGTTTAAAA AGGTCGAAGATGTTAAAGAGCATCAGGTTTCGGAACATGCCGGTAAGCATAATCTGATCAATTTTCAGTTATTGTTGCAACAAAATTCCATTTCGATTTC GACTCACATCTCTCTCTTGCCAGTTACTGAGCTAGCAGAAGGCGACTCATCCAGGCGAGTAGTGGAAATCATCTGCAGGACAAACGACACATCATTACGG ATCGACCGAATTCTGAAGGTGAACAACACGAACGCCACTCTCTCCCGATTCGAGGAGCATCGGGAAACGGTCAAGACTAACGCCACAAAGCTCCCCACAA AGCACCCGCGCTGCCTGGCAGATGGGAACGAGCTGTTGAGGTTCCACGGCACAAACGTATCATGTCCCCTCGGTTCATCGTCCTCGTTCGTCCTCTGCAC AATGGAGGATTGCGGAGTGTGCCAGATTCTACGAAATGGGTTCTCGAATCGAGAGCTGACGGGAAATGTAGGCGTGTTCACCGCTTCAACGAGTAAGAAG GCATTTGAGAAAACGTCGTCTTCTTCAGAAGGTGGAAGGAATGCTTTGGTGCTCTGTAGAGTAATAGCTGGGAGAGTTCATAAGCCGGTTGAGAACATTC AAGAGGTGGTTAACCAGTCCGGGTTCGACTCGCTGGCCGGGAAATTCGGCCAGCATTCGAGTATTGAGGAACTCTACCTGCTCGACCCGAAAGCTCTCCT CCCTTGCTTTGTGGTGATTTGTAGACTGTGA
AA sequence Show only first row Show all	>Lus10007625 pacid=23140321 polypeptide=Lus10007625 locus=Lus10007625.g ID=Lus10007625.BGIv1.0 annot-version=v1.0 MSSVYYHWKSFDDENDEDRPEKPRRYGVTEMRGPQHSFLSQNMLQDIFESMGQFVDGLKFSGGSHSLMPKSFLKEVIDMAHRHDVYVSTGDWAEHLLRKG PSAFKDYIEECKSMGFDTIELNMESLGVPEDTLLRYVRLIKSGGLKAKPQFAIMFNESNIPVCGNRAFGAYVPPAPPRSSGNMLVSAEVVEDVDILIRRA ERCLEAGADMIMIDADDLCKDADRLRADIVAKIIGRLGIEKTMFEASNSRTSEWFVKRYGPKMSTKEGGKPRELCKVWGSLKKSFQTCRPEPMAATEPRK RSTCSSACSRSLSNLRDVIHGSKRHTTECRDDDDGNKPPPNYSPRSLGSSDFLNAVSYDVVPSDSTCELKITGKVSPTTLTSGIKSGNEPSPPRRKSVNG VGNEKPSRFRTAPDVESDGPSPLQCKKCSVQFKKVEDVKEHQVSEHAGKHNLINFQLLLQQNSISISTHISLLPVTELAEGDSSRRVVEIICRTNDTSLR IDRILKVNNTNATLSRFEEHRETVKTNATKLPTKHPRCLADGNELLRFHGTNVSCPLGSSSSFVLCTMEDCGVCQILRNGFSNRELTGNVGVFTASTSKK AFEKTSSSSEGGRNALVLCRVIAGRVHKPVENIQEVVNQSGFDSLAGKFGQHSSIEELYLLDPKALLPCFVVICRL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G21320		HSA32	HEAT-STRESS-ASSOCIATED 32, Ald...		Lus10007625 [exp]	0	1
AT1G07400			HSP20-like chaperones superfam...		Lus10016456 [exp]	4.4	0.9307
AT3G13130			unknown protein		Lus10038793 [exp]	6.9	0.9173
AT5G49910		CPHSC70-2EATSHO...	HEAT SHOCK PROTEIN 70-7, chlor...		Lus10037357 [exp]	7.5	0.9256
AT5G12020		HSP17.6II	17.6 kDa class II heat shock p...		Lus10025005 [exp]	9.2	0.9228
AT5G51720			2 iron, 2 sulfur cluster bindi...		Lus10031105 [exp]	12.0	0.8879
AT5G53400		BOB1, BOBBER1	BOBBER1, HSP20-like chaperones...		Lus10005009 [exp]	12.0	0.8987
AT5G52640		AtHsp90-1, ATHS...	HEAT SHOCK PROTEIN 83, HEAT SH...		Lus10039281 [exp]	12.8	0.9083
AT1G30070			SGS domain-containing protein ...		Lus10038500 [exp]	13.4	0.9078
AT1G66080			unknown protein		Lus10010967 [exp]	13.5	0.9016
AT1G17530		ATTIM23-1	translocase of inner mitochond...		Lus10015922 [exp]	14.2	0.7611

Compare expression of checked genes

Lus10007625 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.