Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G21310 252 / 7e-87 Protein of unknown function (DUF1218) (.1) AT2G32280 209 / 7e-70 Protein of unknown function (DUF1218) (.1) AT1G11500 140 / 2e-42 Protein of unknown function (DUF1218) (.1) AT1G05291 88 / 8e-22 Protein of unknown function (DUF1218) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018386 [exp] 340 / 9e-122 AT4G21310 252 / 5e-87 Protein of unknown function (DUF1218) (.1) Lus10038567 [exp] 201 / 9e-67 AT2G32280 218 / 1e-73 Protein of unknown function (DUF1218) (.1) Lus10039706 [exp] 164 / 2e-52 AT2G32280 222 / 4e-75 Protein of unknown function (DUF1218) (.1) Lus10018495 [exp] 162 / 1e-51 AT2G32280 221 / 6e-75 Protein of unknown function (DUF1218) (.1) Lus10010077 [exp] 42 / 5e-05 AT5G17210 263 / 8e-90 Protein of unknown function (DUF1218) (.1), Protein of unknown function (DUF1218) (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G031500 [exp] 256 / 2e-88 AT4G21310 258 / 3e-89 Protein of unknown function (DUF1218) (.1) Potri.004G031200 [exp] 246 / 2e-84 AT4G21310 226 / 1e-76 Protein of unknown function (DUF1218) (.1) Potri.017G040900 [exp] 230 / 2e-78 AT2G32280 240 / 2e-82 Protein of unknown function (DUF1218) (.1) Potri.007G119600 [exp] 217 / 5e-73 AT2G32280 227 / 3e-77 Protein of unknown function (DUF1218) (.1) Potri.019G048300 [exp] 53 / 8e-09 AT5G17210 188 / 1e-60 Protein of unknown function (DUF1218) (.1), Protein of unknown function (DUF1218) (.2) Potri.004G235000 [exp] 42 / 3e-05 AT1G31720 131 / 8e-39 Protein of unknown function (DUF1218) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF06749 [flax] [poplar] DUF1218 Protein of unknown function (DUF1218)
Representative CDS sequence Show only first row Show all	>Lus10007626 pacid=23140300 polypeptide=Lus10007626 locus=Lus10007626.g ID=Lus10007626.BGIv1.0 annot-version=v1.0 ATGACGAGCAAGAACGTTGGTGTAGCGATATGCCTGCTGATAATGGCCATGGATGTCACTGCTGGCATACTTGGGATCGAAGCTGATATTAGCCAGAACA AGGTCAAGCATCTAAAGGTATGGATCTTCGAGTGCAGAGACCCAAGCCTCAAGGCCTTCAAGCTCGGAATAGCGGCGGCGGTCCTCCTAACGTTTGCCCA CGTCATCGCCAACTTGCTCGGCGGCTGCATTTGCGTCTCTTCCAAGGAAGACTTCCAACGATCCTCCGCCAATCGCCAATTAGCCGTCGCTTCCCTCGTC TTCTCATGGATCGCATTGGTGGTAGGATTCTCGATGCTCATCATCGGAATCATGGCGAACTCCAAGTCGAGGAAGTCGTGTGGTCTTTCTCACAATCGGG TCCTCTCCGTCGGTGGGATCCTCTGCTTCCTTCATGGCCTTTTCACCGTCGCTTACTTCGTCTCCGCCACCGCCACCGCCAAAGAACTTCCGCCGCCGGT TGGCGGCCGCGTTTAG
AA sequence Show only first row Show all	>Lus10007626 pacid=23140300 polypeptide=Lus10007626 locus=Lus10007626.g ID=Lus10007626.BGIv1.0 annot-version=v1.0 MTSKNVGVAICLLIMAMDVTAGILGIEADISQNKVKHLKVWIFECRDPSLKAFKLGIAAAVLLTFAHVIANLLGGCICVSSKEDFQRSSANRQLAVASLV FSWIALVVGFSMLIIGIMANSKSRKSCGLSHNRVLSVGGILCFLHGLFTVAYFVSATATAKELPPPVGGRV

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G21310			Protein of unknown function (D...		Lus10007626 [exp]	0	1
AT5G03795			Exostosin family protein (.1)		Lus10025178 [exp]	1.0	0.9528
AT4G21310			Protein of unknown function (D...		Lus10018386 [exp]	2.0	0.9386
AT1G55190		PRA7, PRA1.F2	PRENYLATED RAB ACCEPTOR 1.F2, ...		Lus10015631 [exp]	4.5	0.8699
AT5G46530			AWPM-19-like family protein (....		Lus10015255 [exp]	4.6	0.9081
AT3G55950		CCR3, ATCRR3	CRINKLY4 related 3 (.1)		Lus10040201 [exp]	11.8	0.8125
AT5G04890		RTM2	RESTRICTED TEV MOVEMENT 2, HSP...		Lus10008946 [exp]	16.0	0.8933
AT5G46530			AWPM-19-like family protein (....		Lus10004587 [exp]	18.8	0.8894
					Lus10007244 [exp]	19.9	0.8142
AT1G31335			unknown protein		Lus10040642 [exp]	20.8	0.8868
AT3G07420		ATNS2, SYNC2_AR...	SYNTHETASE C2, asparaginyl-tRN...		Lus10025874 [exp]	21.3	0.8844

Compare expression of checked genes

Lus10007626 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.