Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G05180 238 / 8e-80 PSII-Q, PSBQ, PSBQ-2 photosystem II subunit Q-2 (.1) AT4G21280 227 / 1e-75 PSBQ, PSBQA, PSBQ-1 PHOTOSYSTEM II SUBUNIT Q-1, photosystem II subunit QA (.1.2) AT3G01440 64 / 4e-12 PnsL3, PQL2, PQL1 PsbQ-like 2, Photosynthetic NDH subcomplex L 3, PsbQ-like 1 (.1) AT1G14150 61 / 2e-11 PnsL2, PQL2, PQL1 PsbQ-like 1, Photosynthetic NDH subcomplex L 2, PsbQ-like 2 (.1.2) AT2G01918 56 / 8e-10 PQL3 PsbQ-like 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018385 [exp] 350 / 4e-124 AT4G05180 275 / 3e-94 photosystem II subunit Q-2 (.1) Lus10020071 [exp] 282 / 2e-97 AT4G05180 282 / 2e-97 photosystem II subunit Q-2 (.1) Lus10006751 [exp] 268 / 1e-88 AT4G05180 271 / 7e-89 photosystem II subunit Q-2 (.1) Lus10037159 [exp] 57 / 8e-10 AT1G14150 177 / 6e-57 PsbQ-like 1, Photosynthetic NDH subcomplex L 2, PsbQ-like 2 (.1.2) Lus10002286 [exp] 55 / 2e-09 AT2G01918 90 / 2e-23 PsbQ-like 3 (.1) Lus10004054 [exp] 53 / 8e-09 AT2G01918 89 / 6e-23 PsbQ-like 3 (.1) Lus10036622 [exp] 50 / 2e-07 AT3G01440 237 / 2e-79 PsbQ-like 2, Photosynthetic NDH subcomplex L 3, PsbQ-like 1 (.1) Lus10035839 [exp] 50 / 2e-07 AT3G01440 232 / 2e-77 PsbQ-like 2, Photosynthetic NDH subcomplex L 3, PsbQ-like 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G031300 [exp] 241 / 1e-80 AT4G05180 261 / 2e-88 photosystem II subunit Q-2 (.1) Potri.004G031500 [exp] 236 / 5e-79 AT4G05180 269 / 1e-91 photosystem II subunit Q-2 (.1) Potri.010G166800 [exp] 63 / 4e-12 AT1G14150 195 / 9e-64 PsbQ-like 1, Photosynthetic NDH subcomplex L 2, PsbQ-like 2 (.1.2) Potri.001G416400 [exp] 61 / 3e-11 AT3G01440 230 / 2e-76 PsbQ-like 2, Photosynthetic NDH subcomplex L 3, PsbQ-like 1 (.1) Potri.017G129700 [exp] 56 / 2e-09 AT2G01918 100 / 7e-27 PsbQ-like 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05757 [flax] [poplar] PsbQ Oxygen evolving enhancer protein 3 (PsbQ)
Representative CDS sequence Show only first row Show all	>Lus10007627 pacid=23140320 polypeptide=Lus10007627 locus=Lus10007627.g ID=Lus10007627.BGIv1.0 annot-version=v1.0 ATGGCTCAGGCAATGGCTTCGATGGGCGGATCTACCCAGCTCAACATCTCGACCGGAACTACTACCCGAGTCTCATCCTCCTCGACCCGGGCTAGCTTTG TGGTTCGGGCTCAGGCTGCTGACCCCGAGACGAGTCGACGTGGCATGATTGGACTCATGGCCGTTGGCTTGGCCTCCGGGTCTTTCGTTCAGGCTGTGCT CGCCGATGCTAGAACGACCCAAATCGGCGGCCCGCCGCCTCTCTCCGGCGGACTCCCGGGGACGCTGAACTCCGACGAGGCGAGGGATCTGGACCTGCCG CTGAAGGAGAGGTTCTACCTGCAGCCGCTGACGCCGGAGCAGGCGGTGGCGAGGGCGAAAGTGTCGGCGAAGGAGATAGTGAGCGTGAAAGATTTCATCG ACAAGAAGGCGTGGCCGTACGTTCAGAACGATCTAAGGCTGAGGGCATCTTACCTTCGTTATGATCTCAAGACGGTGATCTCTGCCAAGCCTAAGCCGGA GAAGCAAGCTCTCACTGACCTCACCGGCAAGCTCTTCCAGAGCATCAACAGCCTGGACTATGCAGCCAAGATCAAGAGCAGTGACCAGGCACAGAAGTAC TACGCCGAGACCGTATCGAACTTGAATGATGTTCTTGCTAAGCTTGGTTAA
AA sequence Show only first row Show all	>Lus10007627 pacid=23140320 polypeptide=Lus10007627 locus=Lus10007627.g ID=Lus10007627.BGIv1.0 annot-version=v1.0 MAQAMASMGGSTQLNISTGTTTRVSSSSTRASFVVRAQAADPETSRRGMIGLMAVGLASGSFVQAVLADARTTQIGGPPPLSGGLPGTLNSDEARDLDLP LKERFYLQPLTPEQAVARAKVSAKEIVSVKDFIDKKAWPYVQNDLRLRASYLRYDLKTVISAKPKPEKQALTDLTGKLFQSINSLDYAAKIKSSDQAQKY YAETVSNLNDVLAKLG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G05180		PSII-Q, PSBQ, P...	photosystem II subunit Q-2 (.1...		Lus10007627 [exp]	0	1
AT4G05180		PSII-Q, PSBQ, P...	photosystem II subunit Q-2 (.1...		Lus10018385 [exp]	1.0	0.9926
AT1G08380		PSAO	photosystem I subunit O (.1)		Lus10005199 [exp]	1.4	0.9746
AT2G30570		PSBW	photosystem II reaction center...		Lus10033862 [exp]	3.3	0.9654
AT4G12800		PSAL	photosystem I subunit l (.1)		Lus10002143 [exp]	5.7	0.9720
AT3G55800		SBPASE	sedoheptulose-bisphosphatase (...		Lus10028261 [exp]	6.3	0.9663
AT4G12830			alpha/beta-Hydrolases superfam...		Lus10008747 [exp]	6.5	0.9672
AT1G30380		PSAK	photosystem I subunit K (.1)		Lus10012086 [exp]	6.9	0.9695
AT1G79040		PSBR	photosystem II subunit R (.1)		Lus10026205 [exp]	7.1	0.9674
AT1G18170			FKBP-like peptidyl-prolyl cis-...		Lus10038954 [exp]	7.9	0.9669
AT1G08380		PSAO	photosystem I subunit O (.1)		Lus10013310 [exp]	8.2	0.9617

Compare expression of checked genes

Lus10007627 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.