Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G12190 57 / 1e-10 RING/U-box superfamily protein (.1) AT4G12140 59 / 3e-10 RING/U-box superfamily protein (.1) AT4G05350 58 / 9e-10 RING/U-box superfamily protein (.1) AT3G58720 59 / 1e-09 RING/U-box superfamily protein (.1.2) AT1G18770 53 / 6e-09 RING/U-box superfamily protein (.1) AT3G46620 56 / 1e-08 zinc finger (C3HC4-type RING finger) family protein (.1) AT3G19950 55 / 3e-08 RING/U-box superfamily protein (.1) AT4G12210 54 / 3e-08 RING/U-box superfamily protein (.1) AT3G51325 50 / 6e-08 RING/U-box superfamily protein (.1) AT1G60360 54 / 7e-08 RING/U-box superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006279 [exp] 107 / 2e-27 AT1G18760 62 / 2e-11 Zinc finger, C3HC4 type (RING finger) family protein (.1) Lus10020558 [exp] 92 / 1e-22 AT1G18760 56 / 1e-10 Zinc finger, C3HC4 type (RING finger) family protein (.1) Lus10012376 [exp] 89 / 3e-21 AT3G46620 60 / 3e-11 zinc finger (C3HC4-type RING finger) family protein (.1) Lus10028009 [exp] 87 / 1e-20 AT5G59550 57 / 5e-10 zinc finger (C3HC4-type RING finger) family protein (.1) Lus10034793 [exp] 87 / 4e-20 AT5G59550 48 / 9e-07 zinc finger (C3HC4-type RING finger) family protein (.1) Lus10033682 [exp] 69 / 2e-13 AT3G19950 67 / 5e-13 RING/U-box superfamily protein (.1) Lus10017722 [exp] 67 / 9e-13 AT3G19950 64 / 5e-12 RING/U-box superfamily protein (.1) Lus10025671 [exp] 60 / 4e-10 AT3G13228 74 / 4e-15 RING/U-box superfamily protein (.1) Lus10018167 [exp] 57 / 4e-09 AT3G19950 75 / 1e-15 RING/U-box superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G118000 [exp] 57 / 2e-09 AT1G18760 81 / 1e-18 Zinc finger, C3HC4 type (RING finger) family protein (.1) Potri.001G103900 [exp] 56 / 4e-09 AT4G26400 85 / 2e-19 RING/U-box superfamily protein (.1.2) Potri.007G107000 [exp] 56 / 4e-09 AT1G18760 79 / 7e-18 Zinc finger, C3HC4 type (RING finger) family protein (.1) Potri.002G083001 [exp] 54 / 2e-08 AT1G18760 81 / 1e-18 Zinc finger, C3HC4 type (RING finger) family protein (.1) Potri.005G062400 [exp] 53 / 4e-08 AT1G60360 82 / 3e-18 RING/U-box superfamily protein (.1) Potri.019G086601 [exp] 53 / 4e-08 AT1G14200 60 / 3e-11 RING/U-box superfamily protein (.1) Potri.004G122000 [exp] 51 / 6e-08 AT1G26800 94 / 1e-24 RING/U-box superfamily protein (.1) Potri.013G116000 [exp] 52 / 9e-08 AT3G30460 61 / 2e-11 RING/U-box superfamily protein (.1) Potri.014G139400 [exp] 52 / 1e-07 AT3G58720 163 / 3e-49 RING/U-box superfamily protein (.1.2) Potri.009G091200 [exp] 52 / 3e-07 AT1G49850 108 / 3e-28 RING/U-box superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [flax] [poplar] RING PF00097 [flax] [poplar] zf-C3HC4 Zinc finger, C3HC4 type (RING finger)
Representative CDS sequence Show only first row Show all	>Lus10007628 pacid=23140295 polypeptide=Lus10007628 locus=Lus10007628.g ID=Lus10007628.BGIv1.0 annot-version=v1.0 ATGAATTCCCCTCAGCAGAATTTTCATCACGGTGGAGAAACAACGCCGCCTCCTCCGGCTAGAACCGCAGGCCGAACTCCGCCGGCGCCGATGAGAACCC AGATACGACGGTCGATCCGAGTTCATAGTCAGAGCGCATCAACTTTCAACGTAGCGAGTGGACAGAGTGAGCAATCTTACACCACAGTTTCCGTTGAGCG AGTAACGGTGACCACACAGAGCGGCGGAACTCCGCCGTCGCCATCCCACCGCCGCCGCAACGTCGAGCTTGATATGCTGCAGAATAGCCAGTTCATTGAT TACGGGATGAGGGAAAATTTAAGGAGATTCAGAGAAGAAATTGAGACGGTAGTCCCGGCGGCGGCTGAAATTGAGAACAGAACATCGCCGGCGGGGGGAT TCCAATACTCTGAGGGACATTCAATTGATTCCCCGACCTACCGCTCCCTCCGCCTTCTCAGTGAAGCAGCTCGTATACAGATCGAACGAGGTCGTGTGGA GAGGGAAAGGGTTTTGAGCAGTCGAAGGAGGCTTCCCTCGCCGGAACCAATCGATAACAACGTAGTAGGCGTTCCGGAGGTAACGACGGAGGAGGCAATG GAAGCCTCCGCCGATGAGGACGATTTCGGCGATGACTTTGAGTTTGACGATTCCCATCTAGATGAGGAGTACATTGAGGATGATGTGGAAGAAGGAGATG AAGAGGACGTCATTAAGACCAGAGGGGCGTCCGATGAGGCGATCCGGAAGCTGGAGAGGGTGGAAATCGGGGTCGGAGGGTGGATGCCGGAGGATTGCTG CTCTGTTTGCTTGGAGGATATGGTCGCCGGCGACTGCAACGGCGGAGGAGCTGCCGGAAGGGTGATTAGGCTAGATTGTAAGCATGATTTCCACGAGTGT TGTTTGATTTCGTGGCTCAAGACATCCAATAGCTGCCCTTTGTGCCGATTCGTAGTTTCAGATTGA
AA sequence Show only first row Show all	>Lus10007628 pacid=23140295 polypeptide=Lus10007628 locus=Lus10007628.g ID=Lus10007628.BGIv1.0 annot-version=v1.0 MNSPQQNFHHGGETTPPPPARTAGRTPPAPMRTQIRRSIRVHSQSASTFNVASGQSEQSYTTVSVERVTVTTQSGGTPPSPSHRRRNVELDMLQNSQFID YGMRENLRRFREEIETVVPAAAEIENRTSPAGGFQYSEGHSIDSPTYRSLRLLSEAARIQIERGRVERERVLSSRRRLPSPEPIDNNVVGVPEVTTEEAM EASADEDDFGDDFEFDDSHLDEEYIEDDVEEGDEEDVIKTRGASDEAIRKLERVEIGVGGWMPEDCCSVCLEDMVAGDCNGGGAAGRVIRLDCKHDFHEC CLISWLKTSNSCPLCRFVVSD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G12140			RING/U-box superfamily protein...		Lus10007628 [exp]	0	1
AT4G21120		CAT1, AAT1	CATIONIC AMINO ACID TRANSPORTE...		Lus10028116 [exp]	1.4	0.8576
AT4G15900		PRL1	pleiotropic regulatory locus 1...		Lus10024785 [exp]	3.3	0.7730
					Lus10019824 [exp]	12.6	0.7528
					Lus10025700 [exp]	13.0	0.7801
					Lus10008155 [exp]	13.2	0.7832
AT3G27810	MYB	AtMYB3, ATMYB21	ARABIDOPSIS THALIANA MYB DOMA...		Lus10013081 [exp]	15.5	0.7665
					Lus10018627 [exp]	17.0	0.7844
					Lus10000650 [exp]	30.2	0.7815
					Lus10017380 [exp]	32.6	0.7116
					Lus10033284 [exp]	35.8	0.7810

Compare expression of checked genes

Lus10007628 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.