Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G21270 876 / 0 KATAP, ATK1 KINESIN-LIKE PROTEIN IN ARABIDOPSIS THALIANA A PROTEIN, KINESIN-LIKE PROTEIN IN ARABIDOPSIS THALIANA A, kinesin 1 (.1) AT4G05190 856 / 0 ATK5 kinesin 5 (.1) AT5G54670 747 / 0 KATC, ATK3 KINESIN-LIKE PROTEIN IN ARABIDOPSIS THALIANA C, kinesin 3 (.1) AT4G27180 736 / 0 KATB, ATK2 KINESIN-LIKE PROTEIN IN ARABIDOPSIS THALIANA B, kinesin 2 (.1) AT1G72250 300 / 3e-87 Di-glucose binding protein with Kinesin motor domain (.1.2) AT2G22610 292 / 9e-85 Di-glucose binding protein with Kinesin motor domain (.1.2) AT5G27550 285 / 3e-84 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT2G47500 285 / 6e-83 P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.1) AT1G73860 285 / 1e-82 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT5G27000 284 / 2e-82 KATD, ATK4 KINESIN-LIKE PROTEIN IN ARABIDOPSIS THALIANA D, kinesin 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018384 [exp] 1412 / 0 AT4G21270 989 / 0.0 KINESIN-LIKE PROTEIN IN ARABIDOPSIS THALIANA A PROTEIN, KINESIN-LIKE PROTEIN IN ARABIDOPSIS THALIANA A, kinesin 1 (.1) Lus10035838 [exp] 760 / 0 AT5G54670 1076 / 0.0 KINESIN-LIKE PROTEIN IN ARABIDOPSIS THALIANA C, kinesin 3 (.1) Lus10036621 [exp] 758 / 0 AT5G54670 1075 / 0.0 KINESIN-LIKE PROTEIN IN ARABIDOPSIS THALIANA C, kinesin 3 (.1) Lus10005582 [exp] 282 / 6e-81 AT1G72250 1109 / 0.0 Di-glucose binding protein with Kinesin motor domain (.1.2) Lus10013714 [exp] 282 / 6e-81 AT1G72250 1098 / 0.0 Di-glucose binding protein with Kinesin motor domain (.1.2) Lus10035954 [exp] 279 / 3e-80 AT2G22610 1302 / 0.0 Di-glucose binding protein with Kinesin motor domain (.1.2) Lus10032264 [exp] 279 / 7e-80 AT1G63640 991 / 0.0 P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.1), P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.2) Lus10025708 [exp] 276 / 3e-79 AT2G22610 1238 / 0.0 Di-glucose binding protein with Kinesin motor domain (.1.2) Lus10029865 [exp] 275 / 8e-79 AT5G27000 1014 / 0.0 KINESIN-LIKE PROTEIN IN ARABIDOPSIS THALIANA D, kinesin 4 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G031200 [exp] 1047 / 0 AT4G21270 1109 / 0.0 KINESIN-LIKE PROTEIN IN ARABIDOPSIS THALIANA A PROTEIN, KINESIN-LIKE PROTEIN IN ARABIDOPSIS THALIANA A, kinesin 1 (.1) Potri.004G031600 [exp] 1013 / 0 AT4G21270 1076 / 0.0 KINESIN-LIKE PROTEIN IN ARABIDOPSIS THALIANA A PROTEIN, KINESIN-LIKE PROTEIN IN ARABIDOPSIS THALIANA A, kinesin 1 (.1) Potri.001G416300 [exp] 785 / 0 AT5G54670 1090 / 0.0 KINESIN-LIKE PROTEIN IN ARABIDOPSIS THALIANA C, kinesin 3 (.1) Potri.011G131900 [exp] 768 / 0 AT5G54670 1058 / 0.0 KINESIN-LIKE PROTEIN IN ARABIDOPSIS THALIANA C, kinesin 3 (.1) Potri.011G140000 [exp] 293 / 9e-85 AT1G72250 1201 / 0.0 Di-glucose binding protein with Kinesin motor domain (.1.2) Potri.001G436200 [exp] 292 / 3e-84 AT1G72250 1248 / 0.0 Di-glucose binding protein with Kinesin motor domain (.1.2) Potri.013G020700 [exp] 284 / 6e-84 AT5G27550 862 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.001G104000 [exp] 287 / 6e-83 AT1G63640 1102 / 0.0 P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.1), P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.2) Potri.003G127800 [exp] 283 / 3e-81 AT1G63640 1065 / 0.0 P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.1), P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.2) Potri.005G030271 [exp] 276 / 3e-81 AT5G27550 865 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00225 [flax] [poplar] Kinesin Kinesin motor domain
Representative CDS sequence Show only first row Show all	>Lus10007629 pacid=23140303 polypeptide=Lus10007629 locus=Lus10007629.g ID=Lus10007629.BGIv1.0 annot-version=v1.0 ATGATGGCTTCTAGGAATCAGAACAGGCCTCCGAGGAGTCCGACGACGAAGCGGGATGGTGGCGATGGTGTTTCTGTGGATAAGCGTAGGAGAGTTGGAG TTGGAGCAGGGAGAACTGGGGGTCCTGACCGGAAGCCGCTCGGTTCAGTTAATAAGAAGCTGGATGGAGCTAGCTCGGCGGCTGCAAATGAAGTGTTGGA GAGTAGTGTGATTGAGTTTACGAAGGAGGAAGTTGAGGTGTTGGTGAATGAGAGGCCTAAGATGAAGAAATTTGATCACAAGGGGAATTTGGAAGTAATG ACTGAGTTTAACGGTAGGCTCAAGATTTGTATCAAATGGTGTCAGAAACAAGAGGAAAAGCATGTCGAAGAGGAGAGTAAACTCCGAAGTGCTCTGGAAG CTTCAGAGAAAAGATGCGTTGATCTTGAGGCGGAAATGAGATGTAAAGAAGAGACGTATAGAACATCCATGGCAGAGTTGAGTCAAGAGAATGCATCTTT GCGAGAGAAACTTTCTAAGGAAGGATCAGAGAAGCTGGCTTCCATTGAGAGCCATAAGAAGGAGCACGAGGCAAGAATCACATTAGAGACTGTGCAGGCA TCTCTCTCAAAGGACCTTGAGAAAGCACATCAAGACATTTTAGTGGCCAACCAAAGGGCAGCCGCGCATGATGCTGACTATAAGAGATCACAGGAGTACA ATCAGAACTTGCAGCAGCATATTAGCAAAGTGCTGGCTGACCTGAATGCAGAACGTGAATCGTTGAAACGAGTGGAGAAGGACAAATCTACAATAGTGGA GAGCCTTAGTGCCTTAAGAGGCCACTATCATTCATTGCAGGAGCAACTCACCATGTCTAAATTGAGTTCTAAACTCTCTTTTGTACTTATTTATTCTCCG TCAGCTGAGACTTCTCGAGATGAGGCAGTCAGTCAGAAAAATTCACTGGAAAATGAAATAAAATGTGTCCGTGGCGATCTCCAACAAGCAAGAGACGACC GAGATCGACAGTTGGCGCAGGTTCAAGCCCTGACAGCTGACTTATTGAAATACCAAGAGAACTCCGGAAAATTTCTTGCTGAGATAGATGTGGTTACTGA GAAGACAAAGTCATTAGAGGAAACATGTTCTTCACAACGGCAGCATATAAGTTTGTTGGAGCAGAAACTGTCTGCAGCGAATGAGAAGTTAAAGATATTG GACTTATCTGCTGGTGAGGCAAGGACAGGATATGAAGAACAGAGAAGAATAGTGACTGACTTGCAGGATCGACTAGCAGATGCAGAACATAAACTCCTTG AAGGAGAGAAGTTGAGGAAGAAGTTGCATAACACCATTTTGGAACTAAAAGGGAACATACGTGTATTCTGTAGAGTTCGCCCCATCTTACCAGATGAGAG CTTTCGAACTGATACCCAAGTCATCTCTTATCCCGGTTCTCTCGAATCTCTTGGCCGTGGCATTGATGTCGTCCAAAATGGTCAGAAGTATCCCTTCACA TTCGATAAGGTGTTTAGTCATGATGCTTCACAGCAAGATGTCTTTGTCGAAATTTCACAGTTGGTTCAGAGTGCCCTTGATGGCTATAAGGTCTGTATAT TTGCTTACGGTCAGACCGGATCAGGAAAAACTTACACCATGATGGGTAAGCCTGAACCACACGACTTGAAGGGGCTAATACCGCGCTCCCTTGAACAAGT ATTTGAAGCTAGTCAGTCCCTTATGGCCCAAGGGTGGAAGTACAAAATGCAGGCATCAATGCTCGAGATATATAACGAAACAATCCGGGATTTGTTGTCA CCAAGCTCTTCCTCTTTCACCGATACTACTGCTGCTGCCAAGCAATATAAAATCCAACATGACACCAGTGGAAACACACATGTAACAGACCTTACCGTCG TTGATGTCAGTAGCATATCCGAAGTGTCATCTCTACTTCGAAAGGCTGCTCAAAGCAGATCTGTTGGGAGAACGAACATGAACGAGCAGTCCTCGAGAAG CCACTTTGTTTTCACACTGCGAATTTATGGTGTGAATGAGGGCACTGACCAACAGTTGCAAGGAGTCCTCAACCTCATCGATCTAGCTGGAAGTGAACGG CTCTCGAAAAGTGGTGCAACTGGTGATCGGTTGAAGGAAACTCAAGCCATTAACAAAAGCTTATCATGCTTGGCGAATGTGATCTTCTCTTTAGCCAAGA AAGAGGACCATGTTCCCTTCAGAGACTCCAAGTTGACTCATCTTCTTCAGCCTTGTTTGGGTGGGGAATCGAAGACGCTAATGTTCGTGAACGTCTCCCC CGACCCTTCCTCTGTCGGAGAGTCGTTGTGCTCGCTGAAGTTTGCAGCCAGGGTCAACGCCTGCGAAATTGGAGTGGCTAGGCGTCAGATGAACTTGAGA CTTCCTGCTGCCGATTCGCGGCTGAGCTATGGTTAA
AA sequence Show only first row Show all	>Lus10007629 pacid=23140303 polypeptide=Lus10007629 locus=Lus10007629.g ID=Lus10007629.BGIv1.0 annot-version=v1.0 MMASRNQNRPPRSPTTKRDGGDGVSVDKRRRVGVGAGRTGGPDRKPLGSVNKKLDGASSAAANEVLESSVIEFTKEEVEVLVNERPKMKKFDHKGNLEVM TEFNGRLKICIKWCQKQEEKHVEEESKLRSALEASEKRCVDLEAEMRCKEETYRTSMAELSQENASLREKLSKEGSEKLASIESHKKEHEARITLETVQA SLSKDLEKAHQDILVANQRAAAHDADYKRSQEYNQNLQQHISKVLADLNAERESLKRVEKDKSTIVESLSALRGHYHSLQEQLTMSKLSSKLSFVLIYSP SAETSRDEAVSQKNSLENEIKCVRGDLQQARDDRDRQLAQVQALTADLLKYQENSGKFLAEIDVVTEKTKSLEETCSSQRQHISLLEQKLSAANEKLKIL DLSAGEARTGYEEQRRIVTDLQDRLADAEHKLLEGEKLRKKLHNTILELKGNIRVFCRVRPILPDESFRTDTQVISYPGSLESLGRGIDVVQNGQKYPFT FDKVFSHDASQQDVFVEISQLVQSALDGYKVCIFAYGQTGSGKTYTMMGKPEPHDLKGLIPRSLEQVFEASQSLMAQGWKYKMQASMLEIYNETIRDLLS PSSSSFTDTTAAAKQYKIQHDTSGNTHVTDLTVVDVSSISEVSSLLRKAAQSRSVGRTNMNEQSSRSHFVFTLRIYGVNEGTDQQLQGVLNLIDLAGSER LSKSGATGDRLKETQAINKSLSCLANVIFSLAKKEDHVPFRDSKLTHLLQPCLGGESKTLMFVNVSPDPSSVGESLCSLKFAARVNACEIGVARRQMNLR LPAADSRLSYG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G21270		KATAP, ATK1	KINESIN-LIKE PROTEIN IN ARABI...		Lus10007629 [exp]	0	1
AT2G33560		BUBR1	BUB1-related (BUB1: budding un...		Lus10030714 [exp]	2.6	0.9618
AT2G33560		BUBR1	BUB1-related (BUB1: budding un...		Lus10013199 [exp]	3.7	0.9561
AT2G42260		PYM, UVI4	POLYCHOME, uv-b-insensitive 4 ...		Lus10008728 [exp]	4.4	0.9317
AT5G60930			P-loop containing nucleoside t...		Lus10000392 [exp]	4.9	0.9477
AT1G35530			DEAD/DEAH box RNA helicase fam...		Lus10009444 [exp]	7.5	0.9427
AT5G05510			Mad3/BUB1 homology region 1 (....		Lus10040947 [exp]	7.7	0.9402
AT5G67100		ICU2	INCURVATA2, DNA-directed DNA p...		Lus10009366 [exp]	9.2	0.9431
AT4G33270		AtCDC20.1, CDC2...	cell division cycle 20.1, Tran...		Lus10006851 [exp]	9.7	0.9477
AT2G36200			P-loop containing nucleoside t...		Lus10014216 [exp]	10.2	0.9509
AT3G44050			P-loop containing nucleoside t...		Lus10008438 [exp]	11.5	0.9451

Compare expression of checked genes

Lus10007629 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.