Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G21410 202 / 3e-56 CRK29 cysteine-rich RLK (RECEPTOR-like protein kinase) 29 (.1) AT4G23280 197 / 1e-54 CRK20 cysteine-rich RLK (RECEPTOR-like protein kinase) 20 (.1) AT4G04510 160 / 9e-42 CRK38 cysteine-rich RLK (RECEPTOR-like protein kinase) 38 (.1) AT4G23210 148 / 1e-37 HIG1, CRK13 cysteine-rich RLK (RECEPTOR-like protein kinase) 13 (.1), cysteine-rich RLK (RECEPTOR-like protein kinase) 13 (.2), cysteine-rich RLK (RECEPTOR-like protein kinase) 13 (.3) AT1G61390 147 / 3e-37 S-locus lectin protein kinase family protein (.1.2) AT4G23230 144 / 4e-37 CRK15 cysteine-rich RLK (RECEPTOR-like protein kinase) 15 (.1) AT4G11900 147 / 5e-37 S-locus lectin protein kinase family protein (.1) AT4G21390 144 / 5e-36 B120 S-locus lectin protein kinase family protein (.1) AT3G16030 144 / 8e-36 CES101 CALLUS EXPRESSION OF RBCS 101, lectin protein kinase family protein (.1) AT1G67520 141 / 1e-35 lectin protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014810 [exp] 241 / 3e-70 AT4G27290 692 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10018377 [exp] 228 / 3e-65 AT4G05200 489 / 4e-164 cysteine-rich RLK (RECEPTOR-like protein kinase) 25 (.1) Lus10018382 [exp] 224 / 2e-64 AT4G21410 605 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 29 (.1) Lus10033742 [exp] 218 / 9e-64 AT4G03230 161 / 2e-42 S-locus lectin protein kinase family protein (.1) Lus10015096 [exp] 219 / 2e-63 AT4G05200 234 / 7e-69 cysteine-rich RLK (RECEPTOR-like protein kinase) 25 (.1) Lus10005053 [exp] 202 / 6e-57 AT1G11410 299 / 1e-90 S-locus lectin protein kinase family protein (.1) Lus10015095 [exp] 201 / 1e-56 AT4G23310 220 / 4e-63 cysteine-rich RLK (RECEPTOR-like protein kinase) 23 (.1) Lus10038411 [exp] 193 / 1e-56 AT1G11330 308 / 1e-98 S-locus lectin protein kinase family protein (.1.2) Lus10007635 [exp] 205 / 2e-56 AT4G21410 385 / 6e-122 cysteine-rich RLK (RECEPTOR-like protein kinase) 29 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G030650 [exp] 363 / 1e-116 AT4G05200 476 / 1e-159 cysteine-rich RLK (RECEPTOR-like protein kinase) 25 (.1) Potri.004G023964 [exp] 237 / 8e-70 AT4G23180 401 / 6e-132 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) Potri.004G024500 [exp] 233 / 2e-67 AT4G23180 675 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) Potri.004G025900 [exp] 232 / 2e-67 AT4G23130 573 / 0.0 RECEPTOR-LIKE PROTEIN KINASE 6, cysteine-rich RLK (RECEPTOR-like protein kinase) 5 (.1), cysteine-rich RLK (RECEPTOR-like protein kinase) 5 (.2) Potri.004G025200 [exp] 229 / 3e-66 AT4G23180 665 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) Potri.004G025650 [exp] 226 / 2e-65 AT4G23180 646 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) Potri.004G026100 [exp] 225 / 9e-65 AT4G23180 662 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) Potri.004G023788 [exp] 224 / 9e-65 AT4G23180 559 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) Potri.011G028400 [exp] 223 / 4e-64 AT4G05200 709 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 25 (.1) Potri.004G023550 [exp] 223 / 4e-64 AT4G05200 541 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 25 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF07714 [flax] [poplar] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase CL0016 [flax] [poplar] PF01657 [flax] [poplar] Stress-antifung Salt stress response/antifungal
Representative CDS sequence Show only first row Show all	>Lus10007631 pacid=23140302 polypeptide=Lus10007631 locus=Lus10007631.g ID=Lus10007631.BGIv1.0 annot-version=v1.0 ATGGCTACACAAAGAAGAAGAATCAGATTCATCATTTCCTTCACAATCTTCACACTAACAATCCATCTCCTACCTTCCACAACCACTTCCCAACCGCCGC CAACTCTAAATAGAGTCTTCTGCTTAGACGGATCAAACTCCACAACGCCACAATCCTACTCATCAACTCTCTCCTCCCTCCTAAACTCCTTACCTTCCGA TTCCTCCACTTTCTCAAACTCTTCGTCCCCCAACGGTCGAGTCCATGCGCTCTACCTCTGCCGCGGGGATGTCTTATTGGAAGTTTGCACGGCCTGTGTC AGGCAAGCCGTGCAGAGCATCCAGCAAACATGTCCGAACCACAGGTCTGCGCTTGTTTGGTACGATGAGTGCATGCTGAGGTACTCCAACGTCAGTTTCT TCGGAGAGGTCCAGACCTCTCCAAACCTGATTCTGGGTAACACCCAGAACACTGCTTCCCCCAACGAGCCGAACAACGGCGCGCTGGCGTTAATCTATGC GCTTATCGACTACGTCCCGTACACCAAGCTGATGTACGGGACGAACGAGTCGGAGGTACGGGGACAAAACCGGTACGCGATGGCACAGTGTGCGAGGGAT TTGAGTAGTGGGGATTGTAGTAGGTGTTTGGGACTGTTGAATGAGGCTAGTACACAGTGTTGCCAGGGGAGAATTGGGTGGAGGATTTTGATACCTAGCT GTAGTTTGAGGTATGAACAGGCTAGGTTCTACCGGCTGCCGGAGCCTCCGCCGGAGTCTCCTCTACCGCCGCCTCCGCCGGCTGGTGATGGCAATGTGGG AGGTGGAGAAGGAAGCAACAATACAGGAAAAATTGTTGGCATCACTGTTTCTTCAATCGTACTAGTAATATTAACCATAGTTGGTGCATGGTACTGTTCA TGTTTCCGGAAGAGGAGAGGAGGAAGATCCAACAATGCAGGCCACAGCGAAGAAATACTACTACCGGATTTCAACGGTTCAGACCATACCGGCATCGTAC CGATCGAAGGGCACGAAAACGACCGTGATCAAGTGCATGTTTACAGTCTGGCAGCCATTCAGGCCGCCACCAACAACTTCTCCGACCGTAATAAGCTCGG ACAGGGCGGGTTCGGCCCTGTCTACATGGGGAAGCTACCGGACGGGCAAGAAATCGCGGTGAAGAGGCTGTCGTTGACATCGAAGCAAGGGTTGGACGAG TTTCGGAATGAAGTGATGGTGATTGTGAAGCTTCAACATAAGAATTTGGTTAGGTTGTTAGGTTATTGCTTGGAGAGAGGGGAGAAGTTGCTTGTATATG AGTATTTGGCCAACACTAGCTTGGATGCTTTCCTTTTCGGTTCGTCTCGTGGATACATGGCGCCAGAGTATGCATTGGAAGGCGTGATCTCGACCAAGTC GGATGTCTATAGCTTCGGAATCTTGATGCTCGAAATTATTAGTGGGAAGAAGAACAGAGGATCTTTCGACCCGGATCAAGCTCCTAGCCTCCTTTTATAC ACGTGGGAGCTATGGAGCAAAGGCCGAGGAGAAGAAATGATCGACCCAGAGATCGTCGAAAATTGTCCGCTAACCGATGCTCTTAGATGGATCCACATTG CCTTGTTATGCACGCAAGACGATCCAGCAGAGAGGCCGATGATGTCTACAGTTGTGCGAATGCTCGGAAGTAAACTGGACGACCTTTCACTGCAGTTAAA ACGTCCATTCACCGCCGGTGGAGGTGGATTCACACATGCTTCTGATATATCGAGCACATCAAAGACCGGGACTGGTTCTGGATTCTTGACATCGGATCAG TCTAATGCTAGTGCCGTTTCGAGATAG
AA sequence Show only first row Show all	>Lus10007631 pacid=23140302 polypeptide=Lus10007631 locus=Lus10007631.g ID=Lus10007631.BGIv1.0 annot-version=v1.0 MATQRRRIRFIISFTIFTLTIHLLPSTTTSQPPPTLNRVFCLDGSNSTTPQSYSSTLSSLLNSLPSDSSTFSNSSSPNGRVHALYLCRGDVLLEVCTACV RQAVQSIQQTCPNHRSALVWYDECMLRYSNVSFFGEVQTSPNLILGNTQNTASPNEPNNGALALIYALIDYVPYTKLMYGTNESEVRGQNRYAMAQCARD LSSGDCSRCLGLLNEASTQCCQGRIGWRILIPSCSLRYEQARFYRLPEPPPESPLPPPPPAGDGNVGGGEGSNNTGKIVGITVSSIVLVILTIVGAWYCS CFRKRRGGRSNNAGHSEEILLPDFNGSDHTGIVPIEGHENDRDQVHVYSLAAIQAATNNFSDRNKLGQGGFGPVYMGKLPDGQEIAVKRLSLTSKQGLDE FRNEVMVIVKLQHKNLVRLLGYCLERGEKLLVYEYLANTSLDAFLFGSSRGYMAPEYALEGVISTKSDVYSFGILMLEIISGKKNRGSFDPDQAPSLLLY TWELWSKGRGEEMIDPEIVENCPLTDALRWIHIALLCTQDDPAERPMMSTVVRMLGSKLDDLSLQLKRPFTAGGGGFTHASDISSTSKTGTGSGFLTSDQ SNASAVSR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G23180		RLK4, CRK10	cysteine-rich RLK (RECEPTOR-li...		Lus10007631 [exp]	0	1
AT4G27290			S-locus lectin protein kinase ...		Lus10014810 [exp]	1.0	0.9604
AT3G09270		ATGSTU8	glutathione S-transferase TAU ...		Lus10017208 [exp]	3.6	0.9337
AT5G42020		BIP2, BIP	luminal binding protein, Heat ...		Lus10007778 [exp]	3.9	0.9319
AT4G27290			S-locus lectin protein kinase ...		Lus10016871 [exp]	4.7	0.9523
AT4G31940		CYP82C4	"cytochrome P450, family 82, s...		Lus10011658 [exp]	4.9	0.9446
AT1G06840			Leucine-rich repeat protein ki...		Lus10034445 [exp]	5.5	0.9434
					Lus10012066 [exp]	6.6	0.9106
AT1G22380		ATUGT85A3	UDP-glucosyl transferase 85A3 ...		Lus10032220 [exp]	7.3	0.9386
AT3G21630		LYSMRLK1, CERK1	LYSM DOMAIN RECEPTOR-LIKE KINA...		Lus10035301 [exp]	7.5	0.9406
AT5G40760		G6PD6	glucose-6-phosphate dehydrogen...		Lus10014615 [exp]	8.3	0.9260

Compare expression of checked genes

Lus10007631 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.