Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G05200 608 / 0 CRK25 cysteine-rich RLK (RECEPTOR-like protein kinase) 25 (.1) AT4G21410 577 / 0 CRK29 cysteine-rich RLK (RECEPTOR-like protein kinase) 29 (.1) AT4G23160 567 / 0 CRK8 cysteine-rich RLK (RECEPTOR-like protein kinase) 8 (.1) AT4G23280 558 / 0 CRK20 cysteine-rich RLK (RECEPTOR-like protein kinase) 20 (.1) AT4G23140 550 / 0 RLK5, CRK6 cysteine-rich RLK (RECEPTOR-like protein kinase) 6 (.1), cysteine-rich RLK (RECEPTOR-like protein kinase) 6 (.2) AT4G23150 549 / 0 CRK7 cysteine-rich RLK (RECEPTOR-like protein kinase) 7 (.1) AT4G23190 530 / 0 AT-RLK3, CRK11 RECEPTOR LIKE PROTEIN KINASE 3, cysteine-rich RLK (RECEPTOR-like protein kinase) 11 (.1) AT4G23270 524 / 5e-179 CRK19 cysteine-rich RLK (RECEPTOR-like protein kinase) 19 (.1) AT4G23220 523 / 1e-177 CRK14 cysteine-rich RLK (RECEPTOR-like protein kinase) 14 (.1) AT3G45860 520 / 8e-177 CRK4 cysteine-rich RLK (RECEPTOR-like protein kinase) 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018382 [exp] 1087 / 0 AT4G21410 605 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 29 (.1) Lus10007633 [exp] 802 / 0 AT4G05200 566 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 25 (.1) Lus10018379 [exp] 772 / 0 AT4G23180 566 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) Lus10026629 [exp] 724 / 0 AT4G23180 540 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) Lus10007634 [exp] 614 / 0 AT4G23160 417 / 1e-137 cysteine-rich RLK (RECEPTOR-like protein kinase) 8 (.1) Lus10007635 [exp] 607 / 0 AT4G21410 385 / 6e-122 cysteine-rich RLK (RECEPTOR-like protein kinase) 29 (.1) Lus10018380 [exp] 532 / 0 AT4G05200 324 / 2e-104 cysteine-rich RLK (RECEPTOR-like protein kinase) 25 (.1) Lus10018381 [exp] 455 / 2e-157 AT4G23180 283 / 3e-91 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) Lus10015091 [exp] 471 / 1e-149 AT5G54650 556 / 1e-178 FORMIN HOMOLOGY 5, formin homology5 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G026350 [exp] 737 / 0 AT4G21410 610 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 29 (.1) Potri.011G030000 [exp] 672 / 0 AT4G21410 566 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 29 (.1) Potri.011G029700 [exp] 668 / 0 AT4G21410 578 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 29 (.1) Potri.011G028800 [exp] 666 / 0 AT4G21410 573 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 29 (.1) Potri.011G029000 [exp] 664 / 0 AT4G21410 537 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 29 (.1) Potri.004G025200 [exp] 632 / 0 AT4G23180 665 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) Potri.011G028400 [exp] 621 / 0 AT4G05200 709 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 25 (.1) Potri.004G026100 [exp] 619 / 0 AT4G23180 662 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) Potri.004G024900 [exp] 613 / 0 AT4G23180 506 / 1e-171 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) Potri.004G025900 [exp] 610 / 0 AT4G23130 573 / 0.0 RECEPTOR-LIKE PROTEIN KINASE 6, cysteine-rich RLK (RECEPTOR-like protein kinase) 5 (.1), cysteine-rich RLK (RECEPTOR-like protein kinase) 5 (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF07714 [flax] [poplar] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase CL0016 [flax] [poplar] PF01657 [flax] [poplar] Stress-antifung Salt stress response/antifungal
Representative CDS sequence Show only first row Show all	>Lus10007632 pacid=23140322 polypeptide=Lus10007632 locus=Lus10007632.g ID=Lus10007632.BGIv1.0 annot-version=v1.0 ATGAATCCTCTCTGTCTTCTTCTCCTCCTCCTTTTACCTTATTACACAACTTCTCAACCAAGTGAGCCAACCTACGTCTTCAAAATATGTTCCAACGTCG GAAACTACACCGCCAGCAGTCCCTATGCAAGAAACCTTAACACCCTCCTCACCTCGATCGCCACGGACAACAACGGAGCCAATTCCGGCTTCTATAACTC GTCATCGGGTCAACCCCCGAACCGGGTCAACGCACTCGGGCTATGCAGAGGCGACATCAATGCAAACGACTGCCGTCAATGCATAAGCAACGCCACCAGC CGGATCCTTCAAGAGTGCCCCAACCAGAAGGAGGCGGTCGTATGGTATGAGACGTGTCAGATCCGGTTCTCGAACCGGTCCATCTTCGGGGTACTCGAAT CAGGCCAGACCACCGTCTATTTGTCTAACCCCCGCAATGCTTCGGACCTGAACCAATTCAACGAAGCACTGGAGACGCTTATGACCCAACTACGATCCAC AACCTCGAGTTCCATGGACAGATTCGCAACGGGGACTCTGAGGCAGGGGTTCAGGACGATCTATGGACTCCTGCAGTGCTCGCCGGATCTGTCCAGCCAG CTCTGCGACCAGTGCCTGGAAGGAGCCATAGGACAAATCCCGAGTTGCTGTGGAGGTAAAATCGGAGGCCGAGTTATAGGCGCTAGCTGTAGTTTAAGGT TCGAGATTGCTCGATTTTATGCGCAGACGGCAGCGCCGCCACCTGCGCCGTCAATATCGCCGCCGCCTCCTCCGTCTCCGCTGGTTTCTTCTCCTCCGGC GCCGGGAAATGGAGGAACTAATAATACCGGCAGGATCATAGCTATTGTGGTTCCGATCGTCGGAGTTTCTGTGCTCGGATTTATCATCTTTTTGTTTTGC TGCCGCCGCAAACTGAAGAAGCCGACAGTGGCAATACAGAGGAACAGTCATTATGGTAATGGGTTGGTTTCTCCTAATAAATTGTGTGAATTAGCGGCGG ATGAAATTAGCAATGAAGGATCGTTGCAATTCGATTTCGACACCGTTAGTGCTGCCACGAACGATTTTGCGGAAGAAAGCAAGCTTGGAGAAGGCGGGTT TGGAGCGGTTTACAAGGGAACTCTATCAAATGGGCAAGACGTGGCAGTGAAGAGGCTGGATAAAGATTCGGGGCAGGGAGATTCAGAGTTCAAGAACGAA GTGAAGTTGGTGGCCAAGCTTCAGCACCGGAATTTAGTGAGGCTACTTGGTTTCTGCTTGGAAGGAAGGGAGAGACTTCTGATTTACGAGTTCGTGCCCA ACACTAGCCTCGATCATTTCCTTTTCGATCGGGAGAAACGGGAATGTTTGGATTGGGAGAGAAGGTACAAGATCATTGGAGGCATTGCGCGAGGACTTGT CTACCTTCATGAGGACTCTAGACTTCGGATCATTCACCGTGATCTTAAAGCCAGTAACATCCTCCTAGATGCGGATATGAGCCCCAAGATAGCTGATTTC GGGATGGCTAGATTGTTTGATATTGATGAGACGCAGGGCAATACCAGTAGGATCGTCGGAACCTATGGTTATATGGCGCCGGAATATGCGATGCACGGTC AATTCTCAATAAAGTCGGACGTGTTTAGTTTTGGCGTGCTTGTTTTAGAGATTGTAAGTGGCCAGAAGAACAACCGTTTCATCCATGGCTCGAGCACAGA GGACCTTTTGAGTTATGCATGGAAGAACTGGAAGGCCGGGACGGACTCACAAGTGATAGACCCGTTACTCGGTAACGTTTCAGGGAACGAGATTGCCAGA TGCATCCACATCGCGTTGCTATGCGTGCAAGAGAATGTCAACGATAGGCCGACCATGACTTCCATTGCACTTATGTTAACCAGTAATTCGTTGAGTCTGC AGCTGCCTTCGAAGCCGGCATTCTTCATGCATACCAACACCACCGACGACTCGTGGGGCTACAGCAGCACTTCGAGGGAGGTCACCGGCTCTTCTCCTTC GGTCGAAGCCCTTCCCCTGTCGAAAAATGACGTCTCCATTACTGAACTTTACCCTCGCTAA
AA sequence Show only first row Show all	>Lus10007632 pacid=23140322 polypeptide=Lus10007632 locus=Lus10007632.g ID=Lus10007632.BGIv1.0 annot-version=v1.0 MNPLCLLLLLLLPYYTTSQPSEPTYVFKICSNVGNYTASSPYARNLNTLLTSIATDNNGANSGFYNSSSGQPPNRVNALGLCRGDINANDCRQCISNATS RILQECPNQKEAVVWYETCQIRFSNRSIFGVLESGQTTVYLSNPRNASDLNQFNEALETLMTQLRSTTSSSMDRFATGTLRQGFRTIYGLLQCSPDLSSQ LCDQCLEGAIGQIPSCCGGKIGGRVIGASCSLRFEIARFYAQTAAPPPAPSISPPPPPSPLVSSPPAPGNGGTNNTGRIIAIVVPIVGVSVLGFIIFLFC CRRKLKKPTVAIQRNSHYGNGLVSPNKLCELAADEISNEGSLQFDFDTVSAATNDFAEESKLGEGGFGAVYKGTLSNGQDVAVKRLDKDSGQGDSEFKNE VKLVAKLQHRNLVRLLGFCLEGRERLLIYEFVPNTSLDHFLFDREKRECLDWERRYKIIGGIARGLVYLHEDSRLRIIHRDLKASNILLDADMSPKIADF GMARLFDIDETQGNTSRIVGTYGYMAPEYAMHGQFSIKSDVFSFGVLVLEIVSGQKNNRFIHGSSTEDLLSYAWKNWKAGTDSQVIDPLLGNVSGNEIAR CIHIALLCVQENVNDRPTMTSIALMLTSNSLSLQLPSKPAFFMHTNTTDDSWGYSSTSREVTGSSPSVEALPLSKNDVSITELYPR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G05200		CRK25	cysteine-rich RLK (RECEPTOR-li...		Lus10007632 [exp]	0	1
AT2G19130			S-locus lectin protein kinase ...		Lus10032944 [exp]	1.7	0.8495
AT1G61560		ATMLO6, MLO6	MILDEW RESISTANCE LOCUS O 6, S...		Lus10036519 [exp]	2.4	0.8202
AT4G37420			Domain of unknown function (DU...		Lus10030740 [exp]	5.3	0.8072
AT2G17290		ATCPK6, ATCDPK3...	calcium dependent protein kina...		Lus10026559 [exp]	6.7	0.7608
AT1G11340			S-locus lectin protein kinase ...		Lus10017247 [exp]	7.9	0.6917
AT2G23450			Protein kinase superfamily pro...		Lus10000741 [exp]	8.5	0.8165
AT4G13040	AP2_ERF		Integrase-type DNA-binding sup...		Lus10022769 [exp]	9.3	0.7126
AT2G36430			Plant protein of unknown funct...		Lus10035569 [exp]	9.5	0.7114
AT5G13200			GRAM domain family protein (.1...		Lus10035154 [exp]	9.9	0.7997
AT2G38470	WRKY	ATWRKY33, WRKY3...	WRKY DNA-binding protein 33 (....		Lus10026409 [exp]	10.0	0.8012

Compare expression of checked genes

Lus10007632 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.