Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G05200 549 / 0 CRK25 cysteine-rich RLK (RECEPTOR-like protein kinase) 25 (.1) AT4G23180 540 / 0 RLK4, CRK10 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) AT4G38830 523 / 3e-178 CRK26 cysteine-rich RLK (RECEPTOR-like protein kinase) 26 (.1) AT4G23280 518 / 2e-176 CRK20 cysteine-rich RLK (RECEPTOR-like protein kinase) 20 (.1) AT4G23140 508 / 2e-172 RLK5, CRK6 cysteine-rich RLK (RECEPTOR-like protein kinase) 6 (.1), cysteine-rich RLK (RECEPTOR-like protein kinase) 6 (.2) AT4G21410 507 / 7e-172 CRK29 cysteine-rich RLK (RECEPTOR-like protein kinase) 29 (.1) AT4G23160 522 / 9e-171 CRK8 cysteine-rich RLK (RECEPTOR-like protein kinase) 8 (.1) AT4G23190 500 / 3e-169 AT-RLK3, CRK11 RECEPTOR LIKE PROTEIN KINASE 3, cysteine-rich RLK (RECEPTOR-like protein kinase) 11 (.1) AT4G11530 499 / 8e-169 CRK34 cysteine-rich RLK (RECEPTOR-like protein kinase) 34 (.1) AT4G21230 492 / 2e-166 CRK27 cysteine-rich RLK (RECEPTOR-like protein kinase) 27 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018382 [exp] 860 / 0 AT4G21410 605 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 29 (.1) Lus10007632 [exp] 832 / 0 AT4G05200 624 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 25 (.1) Lus10007634 [exp] 738 / 0 AT4G23160 417 / 1e-137 cysteine-rich RLK (RECEPTOR-like protein kinase) 8 (.1) Lus10018379 [exp] 694 / 0 AT4G23180 566 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) Lus10007635 [exp] 689 / 0 AT4G21410 385 / 6e-122 cysteine-rich RLK (RECEPTOR-like protein kinase) 29 (.1) Lus10026629 [exp] 647 / 0 AT4G23180 540 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) Lus10031579 [exp] 451 / 2e-150 AT4G23160 477 / 8e-154 cysteine-rich RLK (RECEPTOR-like protein kinase) 8 (.1) Lus10015091 [exp] 465 / 2e-147 AT5G54650 556 / 1e-178 FORMIN HOMOLOGY 5, formin homology5 (.1.2) Lus10031582 [exp] 427 / 2e-141 AT4G05200 436 / 6e-145 cysteine-rich RLK (RECEPTOR-like protein kinase) 25 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G026350 [exp] 663 / 0 AT4G21410 610 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 29 (.1) Potri.011G030000 [exp] 642 / 0 AT4G21410 566 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 29 (.1) Potri.011G029700 [exp] 639 / 0 AT4G21410 578 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 29 (.1) Potri.011G028800 [exp] 637 / 0 AT4G21410 573 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 29 (.1) Potri.011G029000 [exp] 632 / 0 AT4G21410 537 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 29 (.1) Potri.004G025200 [exp] 594 / 0 AT4G23180 665 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) Potri.011G028400 [exp] 587 / 0 AT4G05200 709 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 25 (.1) Potri.004G026100 [exp] 585 / 0 AT4G23180 662 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) Potri.011G028600 [exp] 561 / 0 AT4G21410 554 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 29 (.1) Potri.004G025425 [exp] 557 / 0 AT4G21410 556 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 29 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain CL0016 [flax] [poplar] PF01657 [flax] [poplar] Stress-antifung Salt stress response/antifungal
Representative CDS sequence Show only first row Show all	>Lus10007633 pacid=23140285 polypeptide=Lus10007633 locus=Lus10007633.g ID=Lus10007633.BGIv1.0 annot-version=v1.0 ATGAATTTCCTCTGTCTCCTCCTTCTATTCCTCCTTCTACCCTCCTACATAACAGCACAGACTGAATGCTATAACAACGTCGCCGGCGAGTACGCTACAG ACAACTACACCGCCGGCAGCACGTACTCAAGAAACCTCAACGCCCTCCTGACCTCAATCGTCACGAATTCCGATTCCTACAACTGGTCTTCGGGCCAACC CCCTAACCGGGTCAACGCAATCTGGCGATGCAGGGGCGACCTTACCCCGACCAAATGTCGCGAATGCATGACCAGTGCCACGACCCGGATTCTCCAGGAG TGCCCGAACCGGAAGCAGGCGTTCGGGTGGTACGACACCTGTATGATCCAATACTCGAACCGGTCTCTCTCTGGCATAGTCGAACAGTTTCCTACTTACT TATTCCAGAACATTGGCAATGTTACCGACCCGATCAAATTCGGGGAAGCATTGGAGACGCTGCTCAATCGGCTACGGGTCACCGCATCGAGATCTAGCGC GAGATTCGCTCCCGGGATTCAAATGCAGGAGAATTTCAGGACGATCTACTCGTTCCTGCAATGCAAAAGGGATTTAACTAGCGAGCAATGTGACCGGTGC CTGTCCGATATTCTTTCCCAGCTTTCAAATTGCTGCGGGGGGAAAGTCGGAGGTGGAGTTTATAATCCTAGTTGCGGATATCGATATGACGCTTATCGAT TCTTATCGGAGCCAGAAGCTCCTCCGCCAGCGCCTACAACATCGCCGCCGGCTCCTCCGCTTAATAATTCTCCGCCGCCCCCTGCCTCCCAAGGAATTGG CGGGAATAAAAGCAGGAGTAGGATTATAGCTATTGTGGTTCCGATCGTTGGCGCTTTAGTGCTCGGATTTATGGTTTTCTTGTTCTGCTGCCGCCGCAAA CTGAAGAGGTCCAGAATCGTAAATAAGGGGTCAAGTCAAAATGGCATGACGGCTGGTGAAATTAGCCATGACGGGCCGATGCAATTCGATTTTGACATCA TCGATGTTGCGACGAACGAATTTGCTTACGAAAACAAGCTCGGAGAAGGCGGATTTGGAGCCGTCTACAAAGGAACTTTGTCAAATGGGGAAAAAATCGC TGTGAAGAGGCTGGATAAAGATTCAAGACAAGGAGATTTGGAGTTCAAGAACGAAGTACAATTGGTGGCCAAACTTCAACACCGAAACTTAGTGAGGCTT CTTGGTTTCTGCTTGGAAGAAAGGGAGAGGCTTCTAATCTACGAGTTCGTACCCAATGCTAGTCTTGATCGTTTCCTTTTCGATCCAAATCAACGTTCAC ATTTGAACTGGGAAAGAAGGTACAAAATCATTGGAGGCATTGCTCGAGGACTTGTTTATCTTCATGAAGACTCTAGACTCAAGATCATTCATCGTGATCT CAAAGTGAGCAACATTCTGCTAGACGAAGATATGAACCCGAAGATTGCAGATTTTGGGATGGCTAGACTGTTTGATATCGATGAAACACAGCACAATACT AGCCGAATCGTAGGAACCTATGGCTATATGGCTCCAGAGTATGCATATCATGGTCAATTTTCGGTGAAATCAGACGTGTTTAGCTTTGGTGTGCTTGTTT TGGAGATTGTAAGTGGCCATAAAGTTAACTCTTTCCGCCACGGCACCAACATGGAGGACCTTTTGAGTGATGCATGGAAGAACTGGAACGATGGTACTTG CTCGAACATCGTAGATCCAGCCCTCGATAATGTGTCAGGCACCGAAATAGCAAGATGTATTCATATCGGCCTGCTGTGTGTTCAAGAGAACGTTAACGAT AGGCCAACCATGACTTCGGTCATTCTGATGTTAACTAGCATTTCGATGACTCTACAGCTTCCTTCGAAGCCGGCATTCTTCATGCAGACCCGCACCGAGG AATCTTGGGGCCAAGGTTCTTCACAGGGATACAGTAACACTTCAAAGGAGAGAATTGGTTCTTCTACTTCTACCGAGACCCTTCCCGTGTCGAGAAATGA TGTTACCATTACTGAGCTTTACCCTCGATGA
AA sequence Show only first row Show all	>Lus10007633 pacid=23140285 polypeptide=Lus10007633 locus=Lus10007633.g ID=Lus10007633.BGIv1.0 annot-version=v1.0 MNFLCLLLLFLLLPSYITAQTECYNNVAGEYATDNYTAGSTYSRNLNALLTSIVTNSDSYNWSSGQPPNRVNAIWRCRGDLTPTKCRECMTSATTRILQE CPNRKQAFGWYDTCMIQYSNRSLSGIVEQFPTYLFQNIGNVTDPIKFGEALETLLNRLRVTASRSSARFAPGIQMQENFRTIYSFLQCKRDLTSEQCDRC LSDILSQLSNCCGGKVGGGVYNPSCGYRYDAYRFLSEPEAPPPAPTTSPPAPPLNNSPPPPASQGIGGNKSRSRIIAIVVPIVGALVLGFMVFLFCCRRK LKRSRIVNKGSSQNGMTAGEISHDGPMQFDFDIIDVATNEFAYENKLGEGGFGAVYKGTLSNGEKIAVKRLDKDSRQGDLEFKNEVQLVAKLQHRNLVRL LGFCLEERERLLIYEFVPNASLDRFLFDPNQRSHLNWERRYKIIGGIARGLVYLHEDSRLKIIHRDLKVSNILLDEDMNPKIADFGMARLFDIDETQHNT SRIVGTYGYMAPEYAYHGQFSVKSDVFSFGVLVLEIVSGHKVNSFRHGTNMEDLLSDAWKNWNDGTCSNIVDPALDNVSGTEIARCIHIGLLCVQENVND RPTMTSVILMLTSISMTLQLPSKPAFFMQTRTEESWGQGSSQGYSNTSKERIGSSTSTETLPVSRNDVTITELYPR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G05200		CRK25	cysteine-rich RLK (RECEPTOR-li...		Lus10007633 [exp]	0	1
					Lus10026102 [exp]	1.0	0.9193
AT4G03230			S-locus lectin protein kinase ...		Lus10031591 [exp]	3.0	0.8734
AT4G08850			Leucine-rich repeat receptor-l...		Lus10019035 [exp]	3.5	0.8801
AT2G15080		AtRLP19	receptor like protein 19 (.1.2...		Lus10039512 [exp]	6.3	0.8640
AT5G24320			Transducin/WD40 repeat-like su...		Lus10032436 [exp]	6.9	0.8493
AT1G71400		AtRLP12	receptor like protein 12 (.1)		Lus10014910 [exp]	13.2	0.8583
AT3G47570			Leucine-rich repeat protein ki...		Lus10011388 [exp]	14.5	0.8327
AT4G08850			Leucine-rich repeat receptor-l...		Lus10019036 [exp]	15.9	0.8410
AT2G23200			Protein kinase superfamily pro...		Lus10012101 [exp]	17.1	0.8219
AT1G31710			Copper amine oxidase family pr...		Lus10010542 [exp]	17.5	0.8228

Compare expression of checked genes

Lus10007633 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.