Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G23280 401 / 9e-132 CRK20 cysteine-rich RLK (RECEPTOR-like protein kinase) 20 (.1) AT4G38830 400 / 2e-131 CRK26 cysteine-rich RLK (RECEPTOR-like protein kinase) 26 (.1) AT4G23190 390 / 3e-127 AT-RLK3, CRK11 RECEPTOR LIKE PROTEIN KINASE 3, cysteine-rich RLK (RECEPTOR-like protein kinase) 11 (.1) AT4G05200 379 / 5e-123 CRK25 cysteine-rich RLK (RECEPTOR-like protein kinase) 25 (.1) AT4G21230 377 / 9e-123 CRK27 cysteine-rich RLK (RECEPTOR-like protein kinase) 27 (.1) AT4G23270 372 / 2e-120 CRK19 cysteine-rich RLK (RECEPTOR-like protein kinase) 19 (.1) AT4G21410 370 / 9e-120 CRK29 cysteine-rich RLK (RECEPTOR-like protein kinase) 29 (.1) AT4G23160 382 / 5e-119 CRK8 cysteine-rich RLK (RECEPTOR-like protein kinase) 8 (.1) AT4G23130 367 / 1e-118 RLK6, CRK5 RECEPTOR-LIKE PROTEIN KINASE 6, cysteine-rich RLK (RECEPTOR-like protein kinase) 5 (.1), cysteine-rich RLK (RECEPTOR-like protein kinase) 5 (.2) AT4G23150 361 / 3e-116 CRK7 cysteine-rich RLK (RECEPTOR-like protein kinase) 7 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007633 [exp] 704 / 0 AT4G05200 566 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 25 (.1) Lus10018382 [exp] 640 / 0 AT4G21410 605 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 29 (.1) Lus10007632 [exp] 619 / 0 AT4G05200 624 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 25 (.1) Lus10007635 [exp] 578 / 0 AT4G21410 385 / 6e-122 cysteine-rich RLK (RECEPTOR-like protein kinase) 29 (.1) Lus10026629 [exp] 576 / 0 AT4G23180 540 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) Lus10018379 [exp] 573 / 0 AT4G23180 566 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) Lus10018380 [exp] 402 / 2e-135 AT4G05200 324 / 2e-104 cysteine-rich RLK (RECEPTOR-like protein kinase) 25 (.1) Lus10018377 [exp] 380 / 1e-122 AT4G05200 489 / 4e-164 cysteine-rich RLK (RECEPTOR-like protein kinase) 25 (.1) Lus10031579 [exp] 372 / 1e-120 AT4G23160 477 / 8e-154 cysteine-rich RLK (RECEPTOR-like protein kinase) 8 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G030000 [exp] 509 / 2e-173 AT4G21410 566 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 29 (.1) Potri.011G029700 [exp] 498 / 2e-169 AT4G21410 578 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 29 (.1) Potri.011G028800 [exp] 496 / 3e-168 AT4G21410 573 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 29 (.1) Potri.011G029000 [exp] 495 / 6e-168 AT4G21410 537 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 29 (.1) Potri.004G026350 [exp] 451 / 3e-151 AT4G21410 610 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 29 (.1) Potri.004G025200 [exp] 451 / 5e-151 AT4G23180 665 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) Potri.004G025425 [exp] 441 / 2e-147 AT4G21410 556 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 29 (.1) Potri.004G026100 [exp] 440 / 1e-146 AT4G23180 662 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) Potri.004G026200 [exp] 439 / 1e-146 AT4G05200 573 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 25 (.1) Potri.011G028400 [exp] 422 / 1e-139 AT4G05200 709 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 25 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain CL0016 [flax] [poplar] PF01657 [flax] [poplar] Stress-antifung Salt stress response/antifungal
Representative CDS sequence Show only first row Show all	>Lus10007634 pacid=23140334 polypeptide=Lus10007634 locus=Lus10007634.g ID=Lus10007634.BGIv1.0 annot-version=v1.0 ATGAAGTCCCTCTTTTTCCTCCTCTTCCTCCTTCTACCTACTTACACAACAGCGGATTCCGAATCGGACGAATATGTCGAATGTTACGACGACCCCAGCA AATACACTGTCGGCAACTACACCGCCGGCAGCACGTACGCAAGAAACCTCAACAATCTCCTCACCTCAATCGTCGCCAATTCCGGTTCCTACAACTGGTC TTCAGGTCAACCCGGCCCTGACCGGGTCAACGCAATCTGGCGATGCAGAGGCGACCTTTCACCGAACCAATGCCGTCAATGCATGGTCAAGGCCACTAGC GGGATTCTCGAGGAGTGCCCCAACTGGAAGGAGGCGTACGGTTGGTTCGGAACCTGTATGATCCGGTTCTCGAATTGGTCCATCTTCGGCACACCCCAAA CGTTCCCGACGTACTACTTTTGGAACACTGGCAATAATGTTTCCGACCCGAACTCGTTCACTGAAGCGCTGGAGACGCTGTTCACCCGGATCCGGGTTGC CGCATCTCGATCCGGGGATAGATTCGCTACGGGGAGACAAATGCGGGAGAACTTGACGCCGATCTACGGATATGTACAATGCACACGGGATTTGTCTAGC GACTACTGTGACCGGTGTCTATCCGAAGTTGTTTCCCAGATTCCGACTTGCTGTGCAGGGATAGACGGTGGTGGAGTCATAAATCCTAGCTGCAATTTGA GATTTGACACTTATCGATTCTATGCGGGGACGGATGCACCGCCGGCGCCGGCAACTCCGCTCCCGCCGGATTCCTCCAAAGGAATTGGTGGAGCTAAGAA CAGTAGTAGGATTATAGCTATTGTGGTCCCGATCGTCGGCGCTTCCTTACTCGGCGGCTTTGGCTTCTTCTTCTTCTTCCGATACCGTCGCAGACTGAAG AGGTCCAAAATCGGAAATAAGGGGTCAAGTCAAAATGACATGACGGGGGATGACCTTAGCATGAGTGGATCGCTACAATTCGACTTTGACATCATCAAAG CTGCGACGAACGGATTTACAGACGAAAATAAACTTGGAGAAGGTGGATTTGGAGCCGTTTACAAGGGAACTCTGGCAAATGGACAAGAGATAGCTGTGAA GAGGTTGGATAAAGATTCGAGACAAGGAGATCTGGAGTTCAAGAACGAAGTAAAGTTGGTGGCCGAACTTCAGCACAGGAACTTGGTGAGGCTTCTTGGT TTCTGCTTGGAAGGAAGGGAGAGACTTCTCATCTACGAATTCGTACCCAACGCTAGCCTTGATCGTTTCCTTTTCAATCCTGATAAACATTCACATCTGG ACTGGGAAAGAAGGTACACGATCATTGGAGGCATTGCTCGGGGACTTGTTTACCTTCACGAGGACTCTCGGCTCCGGATCATTCATCGCAATCTCAAAGT CAGCAACATTCTCTTAGATGCAGATATGAACCCAAAAATTGCGGATTTTGGGTTGGCTAAACTGTTTGATATCGATGAAACACAGAACCACACCAACAGA ATCGCATGGAAGAACTGGAATGCTGGGACATACTCGAACGTTGTAGATCCATCACTCGGTAATGTATCAGGGCCCAACATAGCGAGATGTATTCATGTCG GACTGTTGTGTGTCCAAGAGAATGTTAACGACAGGCCAACCATGACTTCAGTTGCACTGATGTTAACTAGCAATTTGATGAGATTGCATCGTCCTTTGAA GCCGGCATTCTTCATGCACACCAGCACCAAAGAACCATGGGGCCAAGGTTCATCCCGGGGATACGGCAGCACTTCAAGCGTGGGTGTTGGTTCTTCTACT TCTACCGATGCCCGTTCTCTTTCGAAAAATGATGTTTCCATCTCTGATCTTTACCCTCGATGA
AA sequence Show only first row Show all	>Lus10007634 pacid=23140334 polypeptide=Lus10007634 locus=Lus10007634.g ID=Lus10007634.BGIv1.0 annot-version=v1.0 MKSLFFLLFLLLPTYTTADSESDEYVECYDDPSKYTVGNYTAGSTYARNLNNLLTSIVANSGSYNWSSGQPGPDRVNAIWRCRGDLSPNQCRQCMVKATS GILEECPNWKEAYGWFGTCMIRFSNWSIFGTPQTFPTYYFWNTGNNVSDPNSFTEALETLFTRIRVAASRSGDRFATGRQMRENLTPIYGYVQCTRDLSS DYCDRCLSEVVSQIPTCCAGIDGGGVINPSCNLRFDTYRFYAGTDAPPAPATPLPPDSSKGIGGAKNSSRIIAIVVPIVGASLLGGFGFFFFFRYRRRLK RSKIGNKGSSQNDMTGDDLSMSGSLQFDFDIIKAATNGFTDENKLGEGGFGAVYKGTLANGQEIAVKRLDKDSRQGDLEFKNEVKLVAELQHRNLVRLLG FCLEGRERLLIYEFVPNASLDRFLFNPDKHSHLDWERRYTIIGGIARGLVYLHEDSRLRIIHRNLKVSNILLDADMNPKIADFGLAKLFDIDETQNHTNR IAWKNWNAGTYSNVVDPSLGNVSGPNIARCIHVGLLCVQENVNDRPTMTSVALMLTSNLMRLHRPLKPAFFMHTSTKEPWGQGSSRGYGSTSSVGVGSST STDARSLSKNDVSISDLYPR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G23160		CRK8	cysteine-rich RLK (RECEPTOR-li...		Lus10007634 [exp]	0	1
AT3G01550		ATPPT2	phosphoenolpyruvate (pep)/phos...		Lus10022257 [exp]	2.6	0.8778
AT1G72970		HTH, EDA17	HOTHEAD, embryo sac developmen...		Lus10015623 [exp]	8.4	0.8381
AT5G02890			HXXXD-type acyl-transferase fa...		Lus10004360 [exp]	8.9	0.8582
AT3G09870			SAUR-like auxin-responsive pro...		Lus10001398 [exp]	13.4	0.8353
AT4G37850	bHLH	bHLH025	basic helix-loop-helix (bHLH) ...		Lus10020503 [exp]	14.4	0.8280
AT5G19220		ADG2, APL1	ADP GLUCOSE PYROPHOSPHORYLASE ...		Lus10010515 [exp]	16.2	0.8684
AT3G55120		A11, CFI, TT5	TRANSPARENT TESTA 5, CHALCONE ...		Lus10003311 [exp]	18.3	0.7928
AT4G31850		PGR3	proton gradient regulation 3 (...		Lus10003424 [exp]	20.3	0.8675
AT5G25880		ATNADP-ME3	Arabidopsis thaliana NADP-mali...		Lus10006037 [exp]	21.4	0.8494
AT3G61220		SDR1	short-chain dehydrogenase/redu...		Lus10006894 [exp]	22.0	0.8245

Compare expression of checked genes

Lus10007634 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.