Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G38830 341 / 3e-105 CRK26 cysteine-rich RLK (RECEPTOR-like protein kinase) 26 (.1) AT4G21410 339 / 2e-104 CRK29 cysteine-rich RLK (RECEPTOR-like protein kinase) 29 (.1) AT4G05200 328 / 1e-100 CRK25 cysteine-rich RLK (RECEPTOR-like protein kinase) 25 (.1) AT4G23220 315 / 6e-95 CRK14 cysteine-rich RLK (RECEPTOR-like protein kinase) 14 (.1) AT4G21230 299 / 9e-90 CRK27 cysteine-rich RLK (RECEPTOR-like protein kinase) 27 (.1) AT4G23190 295 / 5e-88 AT-RLK3, CRK11 RECEPTOR LIKE PROTEIN KINASE 3, cysteine-rich RLK (RECEPTOR-like protein kinase) 11 (.1) AT4G23140 288 / 1e-85 RLK5, CRK6 cysteine-rich RLK (RECEPTOR-like protein kinase) 6 (.1), cysteine-rich RLK (RECEPTOR-like protein kinase) 6 (.2) AT4G23180 283 / 1e-83 RLK4, CRK10 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) AT4G04540 280 / 1e-82 CRK39 cysteine-rich RLK (RECEPTOR-like protein kinase) 39 (.1) AT4G23160 288 / 1e-81 CRK8 cysteine-rich RLK (RECEPTOR-like protein kinase) 8 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007633 [exp] 643 / 0 AT4G05200 566 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 25 (.1) Lus10018382 [exp] 603 / 0 AT4G21410 605 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 29 (.1) Lus10007632 [exp] 580 / 0 AT4G05200 624 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 25 (.1) Lus10007634 [exp] 551 / 0 AT4G23160 417 / 1e-137 cysteine-rich RLK (RECEPTOR-like protein kinase) 8 (.1) Lus10018379 [exp] 458 / 1e-149 AT4G23180 566 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) Lus10026629 [exp] 434 / 3e-140 AT4G23180 540 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) Lus10018377 [exp] 281 / 5e-82 AT4G05200 489 / 4e-164 cysteine-rich RLK (RECEPTOR-like protein kinase) 25 (.1) Lus10031581 [exp] 260 / 6e-76 AT4G23310 213 / 2e-60 cysteine-rich RLK (RECEPTOR-like protein kinase) 23 (.1) Lus10015095 [exp] 253 / 1e-73 AT4G23310 220 / 4e-63 cysteine-rich RLK (RECEPTOR-like protein kinase) 23 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G030000 [exp] 437 / 9e-142 AT4G21410 566 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 29 (.1) Potri.011G029700 [exp] 430 / 5e-139 AT4G21410 578 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 29 (.1) Potri.011G029000 [exp] 429 / 9e-139 AT4G21410 537 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 29 (.1) Potri.011G028800 [exp] 429 / 3e-138 AT4G21410 573 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 29 (.1) Potri.004G026350 [exp] 370 / 2e-116 AT4G21410 610 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 29 (.1) Potri.004G025200 [exp] 370 / 4e-116 AT4G23180 665 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) Potri.004G026100 [exp] 366 / 1e-114 AT4G23180 662 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) Potri.011G028400 [exp] 365 / 2e-114 AT4G05200 709 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 25 (.1) Potri.011G029800 [exp] 363 / 2e-113 AT4G23220 568 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 14 (.1) Potri.011G030200 [exp] 347 / 5e-108 AT4G23220 558 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 14 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF07714 [flax] [poplar] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase CL0016 [flax] [poplar] PF01657 [flax] [poplar] Stress-antifung Salt stress response/antifungal
Representative CDS sequence Show only first row Show all	>Lus10007635 pacid=23140278 polypeptide=Lus10007635 locus=Lus10007635.g ID=Lus10007635.BGIv1.0 annot-version=v1.0 ATGGCTAAATCTCCACGCCTTCCACTCTCTGATGCCCACCTCTCATTCTATTGTTGGCTCATACAAGTCATCTTCCTCCTATGCTTCCTCTCAATCCTCC TATGGAAATGCTTAACCCCGCAACCTCCTCGTTACACCATCACCAACACCTCTTTCAACGACGGGAGGAACCTAACTTCTGTTGTCCTGGACCTCAAAAT TACGAACCCCAACCAGGGCTACCGTGTCTACTACAACCACATGTCTATTAGCCTCGAAGGTTCCATCGTGGGAAATAGGTCGGTTTCGAATTTTGATTCG GGTTTTGGGGAGACGAGTTTTCAAAGGGTGGTGGTGAATGCTACAAAGAGGGGTACTTTGGATGTTGTAAGGTTGAGGTTGGTTGTTGGGGTTGAGTATG AGGATAAGGTGATTGCAATGAGGAGTAAGAGGAAGGAGATGGTGTATGAAGCTGATTTGAGAGTTGGGGTTGATGGCAAGACTGAAGGAGGAAAGGAAGT GGCTATGGTGAGGAATAGGAGAAGGGCGAGAAGAGAAGGAGATGGAGAAGAAGGGAGTTCTTCTTACCTCAAGACAAGTAGAAAGTTCGGAACGTTTGGT ATGTTTAGGTCCAATCGTATGGAGAAACTGGAAAAGCGGGACGTATTCAAGTGTCATGGATCCTTCACTGGGGAGTGTTCCAGGGAACGAGATAGCAAGA TGCATCTATATCGGTTGTTATGCGTGCAAGGGAAAGCGAATGACCGACCAACCATGGCTTCTATTGCTCTGATGCTCACAGCAGTTCGCTCAGTTTGCAG TTGCCGCCGAAGGCAGCCTTCTTCATGCAAACCGATGCCGGAAACTCGAGCCGAGCAACGAATCATGTGGCGTTGGCCAAGAGTGGCCAATCTAGTGGCC AGTCAGTCGTCTGGTCGGTTAGCGAGGCTTTCGCTAGTGAATTATATCCTAGTCCAGGCTGAATGCAATAACTACGCCGGCAACTACACCGCCGGCAGCA CCTACGCAAGAAACATAAAAAATCTCATGACCTCAATCGTCGCGAATTCTGGTTCCTACAACTGGTCTTCAGGTCATGCCCCAGATCGGGTCAATGCAAT CTGGCTATGCATAAACCGTCTTTCCCCGAACGAATGTCATAACTGCCTGATCGGAGCCGCGAGTTCGATTCTCGAGTATTGCCCGAATCAGAAGGAGGGG TACTGGTGGTTTAAAAACTGCATGATCCGGTTTTCGAACCGATCCATCTCTGGCACAATCGAAACGTATCCAACTCGCTACTCTAGCGACGGTGACAATG TTTTCAACCCGAAACCGTTCGAGGAAGCGCTGGAAACGCAGTTCACCCAGCTACGAGCCGTCGCATCTAGATCCCCGGAGAGATTCGCCACGGAGACACA AAATGACGCTTACTTCGGGGCCATCTATGGAGTCATGCAATGTAGTCGGGATCTGTCTAGCGACCTTTGTGACCAGTGCCTATCCTTAATTGCTTCCGAG ATTCCGAATTGCTGCTTAGGGAGAACCGTAGGTGTAGTTTACAGTCCTAGTTGCTTCTTGACATTCTATGCCAAGAAAGAATCGCAGCCGCCTACAACAT CGCCACCGCCTATAACATCGCCACCGCCTACAGCATCACCGCCTCCTCCGTTATATAATCCTTCCTCCGAAGTAATTATTGTGACTAAGAACACGAATAG GATTAATATAGCTATTGTGGTTCCGATCATCGGCGCTTCGGTACTCGGCTTTCTCTTCTTCTTGTTCCTCTACCGCCGCAAACTGACGAGATCCGGAATC GAAAATAAGAGGTCAACTCAAAATGTCACGACGGCGGATGAAGTCAGGCATGGAGGATCTTTGCAATTCGATTTTGACATCATTAGAACTGTGACGAACG GATTTGCTAACGAAAACAAGCTAGGAGAAGGTGGATTTGGAGCTGTCTACAAGGGAACTCTGCAAAATGGACAAGAAATAGCAGTGAAGAGGTTGGATAA AGATTCGAGACAAGGAGATCTGGAGTTCAAGAACGAAGTAAAGTTGGTGGCCGAACTTCAGCACAGGAACTTGGTGAGGCTTCTTGGTTTCTGCTTGGAA GGAAGGGAGAGACTTCTCATCTACGAGTTCGTACCCAACGCTAGCCTTGATCGTTTCCTTTTCAGTACAAGATCATTGGAGGCATTGCTCGAGGACTTGT TTATCTTCATGAAGACTCTAGGCTTCGGATCATTCATCGTGATCTCAAATGGCTATATGGCTCCGGAATACGCACGCCATGGCCAGTTCTCGGCTAAAAC AGACGTGTTTAGCTTTGGTGTGCTAGTTTTGGAGATTGTAAGTGGCCAGAAGATTAACTCTTTTCGCCATGGCACTCGCATGGAGGACCTTTTGAGTTAT GCATGGAAGAACTGGAAGGTTGGGACTTACTCAAACATTATAGATCCATTGCTCGATACCGTATCAGACACGAACATAGCGAGATGTATTCATATCGGGT TGTTGTGTGTTCAAGAGAATGTTAACGACAGGCCAACCATGACTTTGGTTCGTCTGATGTTGACTAGCAATTCGACTAGTATGAAACTTCCTTCGAAGCC GGCATTCTTCATGCAGACCGACACTAAGGAACCACATGGCCAAGGTTCTTCCTGGGTATACAGCAGCACTTCAAGAGAGGGCATTGGTTCTTCTACCTCT ACGGAACCCCTTCCTATGTCGAGAAATGACATGTCCATTACTGAACTTTACCCTCGATGA
AA sequence Show only first row Show all	>Lus10007635 pacid=23140278 polypeptide=Lus10007635 locus=Lus10007635.g ID=Lus10007635.BGIv1.0 annot-version=v1.0 MAKSPRLPLSDAHLSFYCWLIQVIFLLCFLSILLWKCLTPQPPRYTITNTSFNDGRNLTSVVLDLKITNPNQGYRVYYNHMSISLEGSIVGNRSVSNFDS GFGETSFQRVVVNATKRGTLDVVRLRLVVGVEYEDKVIAMRSKRKEMVYEADLRVGVDGKTEGGKEVAMVRNRRRARREGDGEEGSSSYLKTSRKFGTFG MFRSNRMEKLEKRDVFKCHGSFTGECSRERDSKMHLYRLLCVQGKANDRPTMASIALMLTAVRSVCSCRRRQPSSCKPMPETRAEQRIMWRWPRVANLVA SQSSGRLARLSLVNYILVQAECNNYAGNYTAGSTYARNIKNLMTSIVANSGSYNWSSGHAPDRVNAIWLCINRLSPNECHNCLIGAASSILEYCPNQKEG YWWFKNCMIRFSNRSISGTIETYPTRYSSDGDNVFNPKPFEEALETQFTQLRAVASRSPERFATETQNDAYFGAIYGVMQCSRDLSSDLCDQCLSLIASE IPNCCLGRTVGVVYSPSCFLTFYAKKESQPPTTSPPPITSPPPTASPPPPLYNPSSEVIIVTKNTNRINIAIVVPIIGASVLGFLFFLFLYRRKLTRSGI ENKRSTQNVTTADEVRHGGSLQFDFDIIRTVTNGFANENKLGEGGFGAVYKGTLQNGQEIAVKRLDKDSRQGDLEFKNEVKLVAELQHRNLVRLLGFCLE GRERLLIYEFVPNASLDRFLFSTRSLEALLEDLFIFMKTLGFGSFIVISNGYMAPEYARHGQFSAKTDVFSFGVLVLEIVSGQKINSFRHGTRMEDLLSY AWKNWKVGTYSNIIDPLLDTVSDTNIARCIHIGLLCVQENVNDRPTMTLVRLMLTSNSTSMKLPSKPAFFMQTDTKEPHGQGSSWVYSSTSREGIGSSTS TEPLPMSRNDMSITELYPR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G21410		CRK29	cysteine-rich RLK (RECEPTOR-li...		Lus10007635 [exp]	0	1
AT5G63130			Octicosapeptide/Phox/Bem1p fam...		Lus10017947 [exp]	3.9	0.8945
AT1G10470		IBC7, ATRR1, AR...	maternal effect embryo arrest ...		Lus10029211 [exp]	10.2	0.8624
AT1G18740			Protein of unknown function (D...		Lus10028578 [exp]	10.5	0.8722
AT1G18740			Protein of unknown function (D...		Lus10018883 [exp]	10.8	0.8821
AT3G13480			unknown protein		Lus10013407 [exp]	14.1	0.8834
AT4G23496		SP1L5	SPIRAL1-like5 (.1)		Lus10024667 [exp]	18.7	0.8733
AT5G17850			Sodium/calcium exchanger famil...		Lus10005673 [exp]	21.7	0.8705
AT3G61920			unknown protein		Lus10002686 [exp]	24.4	0.8195
AT4G14540	CCAAT	NF-YB3	"nuclear factor Y, subunit B3"...		Lus10016616 [exp]	30.4	0.8579
AT4G14740			Plant protein of unknown funct...		Lus10041187 [exp]	33.8	0.8719

Compare expression of checked genes

Lus10007635 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.