Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G05220 90 / 8e-23 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) AT1G61760 76 / 2e-17 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) AT5G06320 45 / 5e-06 NHL3 NDR1/HIN1-like 3 (.1) AT2G35980 42 / 4e-05 NHL10, YLS9, ATNHL10 YELLOW-LEAF-SPECIFIC GENE 9, ARABIDOPSIS NDR1/HIN1-LIKE 10, Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) AT2G35460 41 / 0.0001 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018376 [exp] 205 / 2e-68 AT4G05220 152 / 3e-46 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10006755 [exp] 102 / 7e-28 AT4G05220 145 / 9e-44 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10020065 [exp] 97 / 1e-25 AT4G05220 135 / 1e-39 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10020066 [exp] 81 / 4e-19 AT4G05220 261 / 6e-89 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10006754 [exp] 81 / 5e-19 AT4G05220 263 / 3e-89 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10021287 [exp] 47 / 1e-06 AT2G35980 236 / 7e-79 YELLOW-LEAF-SPECIFIC GENE 9, ARABIDOPSIS NDR1/HIN1-LIKE 10, Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10021288 [exp] 45 / 4e-06 AT2G35980 237 / 2e-79 YELLOW-LEAF-SPECIFIC GENE 9, ARABIDOPSIS NDR1/HIN1-LIKE 10, Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10016962 [exp] 43 / 3e-05 AT2G35980 237 / 3e-79 YELLOW-LEAF-SPECIFIC GENE 9, ARABIDOPSIS NDR1/HIN1-LIKE 10, Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G027400 [exp] 82 / 8e-20 AT4G05220 264 / 8e-90 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Potri.004G023300 [exp] 81 / 5e-19 AT4G05220 276 / 7e-95 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10007636 pacid=23140291 polypeptide=Lus10007636 locus=Lus10007636.g ID=Lus10007636.BGIv1.0 annot-version=v1.0 ATGTCGAAAGACCCCATAAGACCCACTAAGCTACATTGCCTCTTCATCGGCATCATCGCCCTAATTTTCTGCCTAGCCTTGCGCCCTCACAAATCCAAGT TCGAGTTTCACAACTTCGTTGTACTGGGTCTTGATCGGGCCAATGGGTTCGAGTACACTAACATCTTCTTCAATGTCTCGGTGAAGAATCTCAACAGAGG ACTCAGGATCACCTATGAGATGCTCCCGGCTTCTGTGTACAACAAAGGGGAGCAACTCGGGTCGACTCCCTCGTTTGGTTGTTTCGAGGAGGGGCCCGAG AATACCACATACATTTTTTATGTGTTGACTGGCGGGGTTACGACGGGGAGCTATAGTGGTGGTCAGCCTTGGATGGCAGTCGCAAACGATCGAGCTAAGG GAGCGGTTGAGTTTGAAGTCGACGATTCGCTATCGAAAGACCATATTGAATCTAAGGAAGCATCGGTTGCATCCTAA
AA sequence Show only first row Show all	>Lus10007636 pacid=23140291 polypeptide=Lus10007636 locus=Lus10007636.g ID=Lus10007636.BGIv1.0 annot-version=v1.0 MSKDPIRPTKLHCLFIGIIALIFCLALRPHKSKFEFHNFVVLGLDRANGFEYTNIFFNVSVKNLNRGLRITYEMLPASVYNKGEQLGSTPSFGCFEEGPE NTTYIFYVLTGGVTTGSYSGGQPWMAVANDRAKGAVEFEVDDSLSKDHIESKEASVAS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G05220			Late embryogenesis abundant (L...		Lus10007636 [exp]	0	1
AT3G22060			Receptor-like protein kinase-r...		Lus10012853 [exp]	3.2	0.7173
AT2G01570	GRAS	RGA1	REPRESSOR OF GA1-3 1, REPRESSO...		Lus10018098 [exp]	6.6	0.7632
					Lus10013672 [exp]	9.6	0.7360
AT2G44840	AP2_ERF	ATERF13, EREBP	ethylene-responsive element bi...		Lus10029332 [exp]	12.2	0.7273
AT5G62420			NAD(P)-linked oxidoreductase s...		Lus10031162 [exp]	15.4	0.7239
					Lus10008440 [exp]	17.5	0.7143
AT1G53830		ATPME2	pectin methylesterase 2 (.1)		Lus10027556 [exp]	20.7	0.7132
AT2G15220			Plant basic secretory protein ...		Lus10026579 [exp]	22.3	0.7004
					Lus10022805 [exp]	23.6	0.7004
AT5G05530			RING/U-box superfamily protein...		Lus10024629 [exp]	24.9	0.7004

Compare expression of checked genes

Lus10007636 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.