Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G01190 407 / 4e-143 Peroxidase superfamily protein (.1) AT5G15180 390 / 1e-136 Peroxidase superfamily protein (.1) AT4G11290 357 / 1e-123 Peroxidase superfamily protein (.1) AT1G05260 355 / 1e-122 RCI3A, RCI3 RARE COLD INDUCIBLE GENE 3, Peroxidase superfamily protein (.1) AT3G21770 337 / 2e-115 Peroxidase superfamily protein (.1) AT1G05240 326 / 3e-111 Peroxidase superfamily protein (.1) AT1G05250 326 / 3e-111 Peroxidase superfamily protein (.1) AT5G64120 281 / 2e-93 Peroxidase superfamily protein (.1) AT5G17820 266 / 8e-88 Peroxidase superfamily protein (.1) AT5G51890 265 / 3e-87 Peroxidase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018374 [exp] 634 / 0 AT3G01190 414 / 4e-146 Peroxidase superfamily protein (.1) Lus10006756 [exp] 477 / 1e-170 AT3G01190 379 / 3e-132 Peroxidase superfamily protein (.1) Lus10031548 [exp] 354 / 3e-122 AT1G05260 441 / 1e-156 RARE COLD INDUCIBLE GENE 3, Peroxidase superfamily protein (.1) Lus10015127 [exp] 354 / 4e-122 AT1G05260 444 / 7e-158 RARE COLD INDUCIBLE GENE 3, Peroxidase superfamily protein (.1) Lus10027163 [exp] 344 / 4e-118 AT4G11290 491 / 4e-176 Peroxidase superfamily protein (.1) Lus10039681 [exp] 343 / 4e-118 AT4G11290 488 / 3e-175 Peroxidase superfamily protein (.1) Lus10027164 [exp] 341 / 4e-117 AT1G05260 463 / 3e-165 RARE COLD INDUCIBLE GENE 3, Peroxidase superfamily protein (.1) Lus10039680 [exp] 340 / 1e-116 AT1G05260 458 / 3e-163 RARE COLD INDUCIBLE GENE 3, Peroxidase superfamily protein (.1) Lus10041250 [exp] 282 / 1e-93 AT2G39040 310 / 3e-104 Peroxidase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G063201 [exp] 442 / 6e-157 AT3G01190 412 / 4e-145 Peroxidase superfamily protein (.1) Potri.011G027300 [exp] 440 / 3e-156 AT3G01190 407 / 2e-143 Peroxidase superfamily protein (.1) Potri.004G023200 [exp] 431 / 8e-153 AT3G01190 404 / 5e-142 Peroxidase superfamily protein (.1) Potri.004G023100 [exp] 423 / 2e-149 AT3G01190 403 / 1e-141 Peroxidase superfamily protein (.1) Potri.007G122451 [exp] 390 / 1e-136 AT5G15180 374 / 3e-130 Peroxidase superfamily protein (.1) Potri.007G122301 [exp] 390 / 2e-136 AT5G15180 396 / 9e-139 Peroxidase superfamily protein (.1) Potri.007G122250 [exp] 390 / 2e-136 AT5G15180 396 / 9e-139 Peroxidase superfamily protein (.1) Potri.007G122401 [exp] 390 / 2e-136 AT5G15180 396 / 9e-139 Peroxidase superfamily protein (.1) Potri.007G122351 [exp] 390 / 2e-136 AT5G15180 396 / 9e-139 Peroxidase superfamily protein (.1) Potri.007G122200 [exp] 390 / 2e-136 AT5G15180 395 / 2e-138 Peroxidase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0617 [flax] [poplar] Peroxidase PF00141 [flax] [poplar] peroxidase Peroxidase
Representative CDS sequence Show only first row Show all	>Lus10007638 pacid=23140290 polypeptide=Lus10007638 locus=Lus10007638.g ID=Lus10007638.BGIv1.0 annot-version=v1.0 ATGGCTACTTCTTCTTCTTTATCAAAGTACTTGTTCTTGGCTTTGTTTCTTGGCCTCTTCACGATCTCAAACGCCCAACTCAAAGTGGGTTACTACTCAA AGACTTGCCCTAATGCTGAGGCCATAGTCAAGAAGGAGATGGATCAAGTCATGTACGTGGCTCCTTCCCTCGGTGGGCCCTTGGTCCGCATGCATTTCCA CGATTGCTTCGTTAGGGGTTGTGACGGTTCTGTTCTAATCGCCTCGACGAAAACTAACCAAGCTGAAAAGGACGCGATCCCAAACCTCAGTTTGAGAGGG TTTGGAGTCATCGACCGCGTAAAAAACGCTCTAGAGAAGGCATGCCCTGGAATCGTGTCGTGCTCTGATATCATGGCTATCGTAGTTAGAGATGTTGTAG TCGCGTTGAAAGGTCAGTACTGGGAAGTCGAAACTGGCAGGAGAGACGGACGAGTTTCGATCATGATGGACGCGCTGACAGGATCCCTCCCACCGCCATT TTCGAACATCTCGACCCTTATCTCGGGATTCAAAGCCGTTGGACTCTCTGCCAAGGACTTGGTGGTCTTACAAGGCGCCCACACCATAGGAACCTCCCAT TGCTCTTCCTTCACAACCAGAATCTACAACTTCACCGGCAAAGGTGACGTGGATCCGGCACTCGACTCCAACTACGTGCCCATGCTCAAGAGCAAATGTA CGCCGTCGGATCAGACTACCTTGGTGGAGATGGACCCAGGGAGCTTCAAGACATTTGACAACGAGTACTACAAGCTGGTGGCTAAAAGAAGGGGTCTGTT CCAGTCCGACTCGGCACTGATGGACAACCCTTTGACCAAGGCTTACGTGGAGAAGTATCTGACCGTTGGATCGACCTTTTTGAAGGACTTTGGCGAGTCG ATGGTCAGGATGGGGAGGATTGGTGTGCTTACTGGAAAGCAGGGTGAAATTAGGAAAGTCTGCTACAAGACTAATTAG
AA sequence Show only first row Show all	>Lus10007638 pacid=23140290 polypeptide=Lus10007638 locus=Lus10007638.g ID=Lus10007638.BGIv1.0 annot-version=v1.0 MATSSSLSKYLFLALFLGLFTISNAQLKVGYYSKTCPNAEAIVKKEMDQVMYVAPSLGGPLVRMHFHDCFVRGCDGSVLIASTKTNQAEKDAIPNLSLRG FGVIDRVKNALEKACPGIVSCSDIMAIVVRDVVVALKGQYWEVETGRRDGRVSIMMDALTGSLPPPFSNISTLISGFKAVGLSAKDLVVLQGAHTIGTSH CSSFTTRIYNFTGKGDVDPALDSNYVPMLKSKCTPSDQTTLVEMDPGSFKTFDNEYYKLVAKRRGLFQSDSALMDNPLTKAYVEKYLTVGSTFLKDFGES MVRMGRIGVLTGKQGEIRKVCYKTN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G01190			Peroxidase superfamily protein...		Lus10007638 [exp]	0	1
AT3G47570			Leucine-rich repeat protein ki...		Lus10030903 [exp]	10.8	0.8534
AT1G78990			HXXXD-type acyl-transferase fa...		Lus10000557 [exp]	15.5	0.8370
AT1G22900			Disease resistance-responsive ...		Lus10021083 [exp]	16.2	0.7592
AT1G66350	GRAS	RGL1	RGA-like 1 (.1)		Lus10037753 [exp]	17.4	0.8378
AT5G05340			Peroxidase superfamily protein...		Lus10025255 [exp]	20.3	0.8481
					Lus10029831 [exp]	24.5	0.7954
AT3G09270		ATGSTU8	glutathione S-transferase TAU ...		Lus10017208 [exp]	29.9	0.8474
AT4G04450	WRKY	ATWRKY42, WRKY4...	WRKY family transcription fact...		Lus10038028 [exp]	33.0	0.8304
AT3G57270		BG1	"beta-1,3-glucanase 1", beta-1...		Lus10014108 [exp]	38.4	0.8342
AT4G27595			Plant protein of unknown funct...		Lus10042237 [exp]	42.0	0.7575

Compare expression of checked genes

Lus10007638 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.