Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G21215 76 / 3e-17 unknown protein AT4G39900 43 / 5e-05 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018373 [exp] 325 / 8e-115 AT4G21215 87 / 3e-21 unknown protein Lus10006757 [exp] 164 / 2e-51 AT4G21215 86 / 6e-21 unknown protein Lus10020063 [exp] 162 / 2e-50 AT4G21215 85 / 1e-20 unknown protein Lus10024045 [exp] 45 / 1e-05 AT4G39900 131 / 4e-37 unknown protein Lus10041703 [exp] 40 / 0.0004 AT4G39900 118 / 2e-32 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G026900 [exp] 140 / 8e-42 AT4G21215 91 / 2e-22 unknown protein Potri.004G023000 [exp] 138 / 3e-41 AT4G21215 108 / 2e-29 unknown protein Potri.008G145000 [exp] 52 / 2e-08 AT4G39900 45 / 3e-06 unknown protein Potri.010G097100 [exp] 50 / 5e-08 AT4G21215 48 / 4e-07 unknown protein Potri.007G093200 [exp] 40 / 0.0005 AT4G39900 171 / 9e-53 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10007639 pacid=23140283 polypeptide=Lus10007639 locus=Lus10007639.g ID=Lus10007639.BGIv1.0 annot-version=v1.0 ATGTCGTCGACGACGACGACGACCCAGAAAATCTCGGTGGTCGATCATATCAACGGATTCCAGTACACGCCGGAAAGATCATCCTCGTCGGGGGATAACT TCGTTATCGACATGATGGAAGATCTTTCCCATAACAACGACAGCTACCCAAATTCCAGAATCACGCTGCAGAGGAGTTTATCTCGAAAAGGGTTGGTTCG AGGGGGCGGCGGTTCGGAGAAGAAGGCGGTTGTTGAATCATCTGTAGTTGCTGGAGCTTGTTCATCGCCAAGAACAGGAGCAGCTTTGGTTGGAAGTAGC GGCACGCCAGAAAAGGGAATCTCTGCTGTAGGGAATCATCAGATTACTATAACCTCCGTCGCCGGAGGGAACATCAAGGCTACTGCTGCCAGCGGTGACC AAGGAGGAAGATGCACTACCAGAAGGAACAGTTTCAAGCGTTGTCAAGCTCCCTGGCTTCTTGATCCTAGAAAAGTCGTCATCTTTTTCGCCACCCTGTC AAGCATGGGGACATTGCTGCTGATTTACTTCACACTGTCCATTGGCAGACTCCAGTCAGAAGAATCTGCTGCTGCCATGGAATGA
AA sequence Show only first row Show all	>Lus10007639 pacid=23140283 polypeptide=Lus10007639 locus=Lus10007639.g ID=Lus10007639.BGIv1.0 annot-version=v1.0 MSSTTTTTQKISVVDHINGFQYTPERSSSSGDNFVIDMMEDLSHNNDSYPNSRITLQRSLSRKGLVRGGGGSEKKAVVESSVVAGACSSPRTGAALVGSS GTPEKGISAVGNHQITITSVAGGNIKATAASGDQGGRCTTRRNSFKRCQAPWLLDPRKVVIFFATLSSMGTLLLIYFTLSIGRLQSEESAAAME

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G21215			unknown protein		Lus10007639 [exp]	0	1
AT5G23550			Got1/Sft2-like vescicle transp...		Lus10039619 [exp]	4.2	0.8295
AT4G40080			ENTH/ANTH/VHS superfamily prot...		Lus10002642 [exp]	4.4	0.7886
AT1G19430			S-adenosyl-L-methionine-depend...		Lus10000716 [exp]	16.0	0.7763
AT1G54730			Major facilitator superfamily ...		Lus10029962 [exp]	18.9	0.7260
AT3G19000			2-oxoglutarate (2OG) and Fe(II...		Lus10020999 [exp]	22.4	0.8226
AT1G69523			S-adenosyl-L-methionine-depend...		Lus10037162 [exp]	33.7	0.8197
AT4G05000		VPS28-2, VPS28-...	vacuolar protein sorting-assoc...		Lus10011243 [exp]	37.8	0.7337
AT2G32260		ATCCT1	phosphorylcholine cytidylyltra...		Lus10010471 [exp]	38.9	0.7285
AT1G73390			Endosomal targeting BRO1-like ...		Lus10031313 [exp]	40.0	0.7762
AT1G07630		PLL5	pol-like 5 (.1)		Lus10024397 [exp]	43.2	0.8081

Compare expression of checked genes

Lus10007639 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.