Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G21200 415 / 4e-146 ATGA2OX8 ARABIDOPSIS THALIANA GIBBERELLIN 2-OXIDASE 8, gibberellin 2-oxidase 8 (.1.2.3) AT1G50960 269 / 2e-88 ATGA2OX7 ARABIDOPSIS THALIANA GIBBERELLIN 2-OXIDASE 7, gibberellin 2-oxidase 7 (.1) AT5G58660 168 / 4e-49 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT3G19010 164 / 8e-48 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.3) AT3G21420 157 / 4e-45 LBO1 LATERAL BRANCHING OXIDOREDUCTASE 1, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT5G05600 157 / 7e-45 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT1G77330 155 / 1e-44 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT1G62380 154 / 2e-44 ATACO2, ACO2 ACC oxidase 2 (.1) AT4G25420 154 / 8e-44 AT2301, GA5, ATGA20OX1 GA REQUIRING 5, ARABIDOPSIS THALIANA GIBBERELLIN 20-OXIDASE 1, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT5G24530 153 / 1e-43 DMR6 DOWNY MILDEW RESISTANT 6, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018372 [exp] 631 / 0 AT4G21200 419 / 2e-147 ARABIDOPSIS THALIANA GIBBERELLIN 2-OXIDASE 8, gibberellin 2-oxidase 8 (.1.2.3) Lus10006759 [exp] 454 / 2e-161 AT4G21200 419 / 2e-147 ARABIDOPSIS THALIANA GIBBERELLIN 2-OXIDASE 8, gibberellin 2-oxidase 8 (.1.2.3) Lus10029081 [exp] 356 / 1e-122 AT4G21200 365 / 3e-126 ARABIDOPSIS THALIANA GIBBERELLIN 2-OXIDASE 8, gibberellin 2-oxidase 8 (.1.2.3) Lus10013069 [exp] 357 / 2e-122 AT4G21200 366 / 5e-126 ARABIDOPSIS THALIANA GIBBERELLIN 2-OXIDASE 8, gibberellin 2-oxidase 8 (.1.2.3) Lus10012912 [exp] 350 / 3e-120 AT4G21200 368 / 2e-127 ARABIDOPSIS THALIANA GIBBERELLIN 2-OXIDASE 8, gibberellin 2-oxidase 8 (.1.2.3) Lus10030567 [exp] 350 / 3e-120 AT4G21200 370 / 2e-128 ARABIDOPSIS THALIANA GIBBERELLIN 2-OXIDASE 8, gibberellin 2-oxidase 8 (.1.2.3) Lus10008824 [exp] 158 / 2e-45 AT1G49390 410 / 2e-143 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10011985 [exp] 157 / 1e-44 AT1G17020 367 / 4e-126 senescence-related gene 1 (.1) Lus10006518 [exp] 156 / 1e-44 AT3G21420 523 / 0.0 LATERAL BRANCHING OXIDOREDUCTASE 1, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G022800 [exp] 497 / 3e-178 AT4G21200 441 / 7e-156 ARABIDOPSIS THALIANA GIBBERELLIN 2-OXIDASE 8, gibberellin 2-oxidase 8 (.1.2.3) Potri.011G026700 [exp] 471 / 3e-168 AT4G21200 444 / 1e-157 ARABIDOPSIS THALIANA GIBBERELLIN 2-OXIDASE 8, gibberellin 2-oxidase 8 (.1.2.3) Potri.010G096800 [exp] 354 / 7e-122 AT4G21200 362 / 8e-125 ARABIDOPSIS THALIANA GIBBERELLIN 2-OXIDASE 8, gibberellin 2-oxidase 8 (.1.2.3) Potri.001G418200 [exp] 350 / 1e-120 AT4G21200 369 / 8e-128 ARABIDOPSIS THALIANA GIBBERELLIN 2-OXIDASE 8, gibberellin 2-oxidase 8 (.1.2.3) Potri.008G145300 [exp] 345 / 2e-118 AT4G21200 354 / 1e-121 ARABIDOPSIS THALIANA GIBBERELLIN 2-OXIDASE 8, gibberellin 2-oxidase 8 (.1.2.3) Potri.011G134000 [exp] 334 / 3e-114 AT4G21200 340 / 1e-116 ARABIDOPSIS THALIANA GIBBERELLIN 2-OXIDASE 8, gibberellin 2-oxidase 8 (.1.2.3) Potri.011G134100 [exp] 315 / 8e-107 AT4G21200 324 / 2e-110 ARABIDOPSIS THALIANA GIBBERELLIN 2-OXIDASE 8, gibberellin 2-oxidase 8 (.1.2.3) Potri.001G278200 [exp] 203 / 6e-63 AT5G58660 312 / 2e-105 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.010G023600 [exp] 171 / 4e-50 AT3G21420 511 / 0.0 LATERAL BRANCHING OXIDOREDUCTASE 1, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.016G117100 [exp] 164 / 2e-47 AT5G05600 491 / 4e-175 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0029 [flax] [poplar] Cupin PF03171 [flax] [poplar] 2OG-FeII_Oxy 2OG-Fe(II) oxygenase superfamily
Representative CDS sequence Show only first row Show all	>Lus10007640 pacid=23140332 polypeptide=Lus10007640 locus=Lus10007640.g ID=Lus10007640.BGIv1.0 annot-version=v1.0 ATGGAGATCGACCCACCTCTCTACAACACTTACAAGGACCTCCTGGAAAGTCACCATGATGACTGTAACACCATCCCACCGGCCGACGTAGCTCCTCCTC TCGACCTACCGGTGATCGACCTGTCCAGGCTGATCACCAACGGCGACGAGAGGGAAAGCTGCAAAAGCGAGATCGCGAGGGCGTCGGAGGAGTGGGGGTT CTTCCAGGTGGTGAACCACGGGATATCTCGCGAGATTTTGGACGGGATGAGGGAGGAGCAAGTGAAGGTGTTCAAGCAGCCGTTTGATATGAAGAGGGAA GAGGATAAGTTCTTGAAATTCTCGCCGGGGACTTACCGGTGGGGCACTCCGTCGGCAACGAGTTTGAAGCAGCTCGCTTGGTCGGAGGCTTTCCATATCC CAATGTCGGATATCTCCCCGCCAGCGGTCAACGGGCCGTTCGATAATAGCCTCAGCTCGACGATGGAGCAGTTCGGGGCGACGGTGGCCGATCTGGCGCA GAAGCTGGCCGGGATACTGGCGGAGAGAGTGGGGAGGAAGTCGAGCTTCTTCAAAGAGAAGTGTTTGGCTAGCAGTTGCTACCTTCGTATGAATAGGTAC CCGCCTTGTCCGATGCCGTCCGAGGTCTTCGGAATGATGCCGCACACCGACAGCGACTTCCTGACGATTCTGCACCAAGATCAAGTCGGTGGCCTCCAGT TGGTCCGAGATGGCAAGTGGTTCGCCGTCAAGCCCGATCCCCGAGCTCTCATCATCAACATTGGCGACCTTTTCCAGGCATGGAGCAACGACGTGTACAA GAGTGTGGTGCATCGAGTGGTGGCGAACCCACGGGTGGAGAGGTTCTCGACGGCCTACTTCTTCTGCCCATCGTACGATACCGAGATCGAAAGCGACTCC GAACCTTCCGTGTACAAAAAATTCAGCTTCGGAGACTATAGGAAACAGGTTCAGACCGATGTCCAAAAGTTAGGATATAAGATTGGTCTCCCCCATTACT TTGTAGAATAG
AA sequence Show only first row Show all	>Lus10007640 pacid=23140332 polypeptide=Lus10007640 locus=Lus10007640.g ID=Lus10007640.BGIv1.0 annot-version=v1.0 MEIDPPLYNTYKDLLESHHDDCNTIPPADVAPPLDLPVIDLSRLITNGDERESCKSEIARASEEWGFFQVVNHGISREILDGMREEQVKVFKQPFDMKRE EDKFLKFSPGTYRWGTPSATSLKQLAWSEAFHIPMSDISPPAVNGPFDNSLSSTMEQFGATVADLAQKLAGILAERVGRKSSFFKEKCLASSCYLRMNRY PPCPMPSEVFGMMPHTDSDFLTILHQDQVGGLQLVRDGKWFAVKPDPRALIINIGDLFQAWSNDVYKSVVHRVVANPRVERFSTAYFFCPSYDTEIESDS EPSVYKKFSFGDYRKQVQTDVQKLGYKIGLPHYFVE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G21200		ATGA2OX8	ARABIDOPSIS THALIANA GIBBERELL...		Lus10007640 [exp]	0	1
AT1G08170			Histone superfamily protein (....		Lus10041351 [exp]	1.7	0.9767
AT3G18280			Bifunctional inhibitor/lipid-t...		Lus10013030 [exp]	2.4	0.9672
AT3G52790			peptidoglycan-binding LysM dom...		Lus10027407 [exp]	2.8	0.9719
AT4G09570		CPK4, ATCPK4	calcium-dependent protein kina...		Lus10009427 [exp]	3.2	0.9549
AT3G18280			Bifunctional inhibitor/lipid-t...		Lus10029131 [exp]	3.5	0.9522
AT4G33550			Bifunctional inhibitor/lipid-t...		Lus10019029 [exp]	4.0	0.9664
AT2G41905			unknown protein		Lus10040498 [exp]	5.5	0.9159
AT3G56850	bZIP	DPBF3, AREB3	ABA-responsive element binding...		Lus10028888 [exp]	5.9	0.9423
AT3G53720		ATCHX20	cation/H+ exchanger 20, cation...		Lus10025325 [exp]	7.5	0.9177
AT2G46890			Protein of unknown function (D...		Lus10010291 [exp]	7.5	0.9351

Compare expression of checked genes

Lus10007640 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.