Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G05230 145 / 1e-42 Ubiquitin-like superfamily protein (.1) AT2G32350 101 / 2e-25 Ubiquitin-like superfamily protein (.1) AT4G03370 82 / 5e-18 Ubiquitin family protein (.1) AT4G02970 81 / 8e-18 AT7SL-1 7SL RNA1 (.1) AT4G03360 71 / 7e-14 Ubiquitin family protein (.1) AT4G02950 70 / 1e-13 CRRJ Ubiquitin family protein (.1) AT4G03350 66 / 2e-12 EVE1 ETERNALLY VEGETATIVE PHASE 1, ubiquitin family protein (.1) AT4G05260 58 / 1e-09 Ubiquitin-like superfamily protein (.1) AT5G37640 58 / 2e-09 UBQ9 ubiquitin 9 (.1) AT4G05050 55 / 9e-09 UBQ11 ubiquitin 11 (.1.2.3.4)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018369 [exp] 217 / 9e-72 AT4G05230 143 / 5e-44 Ubiquitin-like superfamily protein (.1) Lus10018370 [exp] 159 / 3e-49 AT4G02970 60 / 3e-12 7SL RNA1 (.1) Lus10039679 [exp] 72 / 2e-14 AT2G32350 239 / 1e-79 Ubiquitin-like superfamily protein (.1) Lus10018367 [exp] 55 / 1e-08 AT4G05320 452 / 4e-164 polyubiquitin 10 (.1.2.3.4.5.6)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G022400 [exp] 255 / 6e-85 AT4G05230 144 / 1e-42 Ubiquitin-like superfamily protein (.1) Potri.017G037600 [exp] 115 / 1e-30 AT2G32350 294 / 4e-101 Ubiquitin-like superfamily protein (.1) Potri.011G026600 [exp] 55 / 9e-09 AT4G05050 452 / 3e-164 ubiquitin 11 (.1.2.3.4) Potri.006G129600 [exp] 56 / 1e-08 AT5G20620 600 / 0.0 ubiquitin 4 (.1) Potri.004G021500 [exp] 55 / 1e-08 AT4G02890 604 / 0.0 Ubiquitin family protein (.1.2.3.4) Potri.011G134200 [exp] 56 / 2e-08 AT4G05320 900 / 0.0 polyubiquitin 10 (.1.2.3.4.5.6) Potri.017G036800 [exp] 55 / 2e-08 AT4G05320 753 / 0.0 polyubiquitin 10 (.1.2.3.4.5.6) Potri.001G418500 [exp] 55 / 2e-08 AT4G05320 753 / 0.0 polyubiquitin 10 (.1.2.3.4.5.6) Potri.001G263000 [exp] 55 / 2e-08 AT4G05320 752 / 0.0 polyubiquitin 10 (.1.2.3.4.5.6) Potri.007G123300 [exp] 55 / 2e-08 AT4G05320 753 / 0.0 polyubiquitin 10 (.1.2.3.4.5.6)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0072 [flax] [poplar] Ubiquitin PF00240 [flax] [poplar] ubiquitin Ubiquitin family
Representative CDS sequence Show only first row Show all	>Lus10007641 pacid=23140296 polypeptide=Lus10007641 locus=Lus10007641.g ID=Lus10007641.BGIv1.0 annot-version=v1.0 ATGGACCTCCACATCGTCACGAAGGGGTCCCCACCGTTCACGATCGAAATCTGGTACTTCGACACCGTTTCGGAGATCAAGAGGAAGATCCACAAGTCCA AAGGCATCCCAATCAACAGACAAACGCTCTTCCTCAACGGCCAATTGCTCCTCGACGAGCATGACACTGTCCACTACCACATCCTCCAAGACTCCCGCAT CCAGCTCCACGTGTCCCCCTCCGACCCCTCCGCCGTCGATGCTAAACCAACGATCATTACTACCTCCTCCGCCACCGATCACCAACCACAACCACAACAG ACAGTCCAACCTCCTCCTCCGAGCAACAAAATCACAATCAGAGTCAAAAACCCGAAACTCAACCATCATCTCTCGGTCGAGATCGATCAAAACGACACCG TTTCACATCTAAAGGAGAAAATCCATGAATTGGACGGGATCGCGGTTAACAGGCTGGTCCTCCAATCCAACAGTGGATCCGAGCTCCACGATAGCCGGAC CTTAAGAGACTACGATCTCGTCGACAACAGCGAGATCACTGCCGGCCTGCGCCCTCAGCCGGTTGTTACCGTCGTGGGAGGACCCTCCTCGACTGGGTCA TCGTCGAAGAAGATGAAGCTGCTGGTGTTGACCAAATGCGGGACCAAGAAAGTTCCCGTGGAGGTGAACGCAGGGGATAATGTTGGAGAGCTGAGGAAGG AATTACAGAGGATGCAACAGAAGCTTCAGTTTCCTCTGCCGCAGGAAGGGTATTTTTTCATATATAAACAGAATGTTATGGACGACGACCAGTCGTTCCG ATGGCACCATGTCGGCCATGGCGATACCATTGAGATCTTCAATGGCAGCGTTACGGGTGGATCGTAA
AA sequence Show only first row Show all	>Lus10007641 pacid=23140296 polypeptide=Lus10007641 locus=Lus10007641.g ID=Lus10007641.BGIv1.0 annot-version=v1.0 MDLHIVTKGSPPFTIEIWYFDTVSEIKRKIHKSKGIPINRQTLFLNGQLLLDEHDTVHYHILQDSRIQLHVSPSDPSAVDAKPTIITTSSATDHQPQPQQ TVQPPPPSNKITIRVKNPKLNHHLSVEIDQNDTVSHLKEKIHELDGIAVNRLVLQSNSGSELHDSRTLRDYDLVDNSEITAGLRPQPVVTVVGGPSSTGS SSKKMKLLVLTKCGTKKVPVEVNAGDNVGELRKELQRMQQKLQFPLPQEGYFFIYKQNVMDDDQSFRWHHVGHGDTIEIFNGSVTGGS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G05230			Ubiquitin-like superfamily pro...		Lus10007641 [exp]	0	1
AT4G36220		CYP84A1, FAH1, ...	ferulic acid 5-hydroxylase 1 (...		Lus10000326 [exp]	3.5	0.9363
AT4G37870		PCK1, PEPCK	phosphoenolpyruvate carboxykin...		Lus10019242 [exp]	4.0	0.9602
					Lus10040421 [exp]	5.2	0.9072
					Lus10010270 [exp]	5.7	0.9383
AT1G22440			Zinc-binding alcohol dehydroge...		Lus10009517 [exp]	7.3	0.9488
AT1G11340			S-locus lectin protein kinase ...		Lus10030766 [exp]	8.8	0.9073
AT3G12500		PR-3, PR3, CHI-...	PATHOGENESIS-RELATED 3, basic ...		Lus10041831 [exp]	10.2	0.9253
AT3G28960			Transmembrane amino acid trans...		Lus10023029 [exp]	12.2	0.9076
AT1G25270			nodulin MtN21 /EamA-like trans...		Lus10015066 [exp]	12.6	0.9335
AT1G04670			unknown protein		Lus10004041 [exp]	13.9	0.9262

Compare expression of checked genes

Lus10007641 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.