Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G20870 127 / 9e-34 HSP20-like chaperones superfamily protein (.1) AT1G54840 68 / 4e-13 HSP20-like chaperones superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018368 [exp] 393 / 7e-139 AT1G20870 150 / 9e-42 HSP20-like chaperones superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G005400 [exp] 123 / 1e-32 AT1G20870 179 / 1e-51 HSP20-like chaperones superfamily protein (.1) Potri.013G024750 [exp] 80 / 7e-17 AT1G54850 187 / 1e-57 HSP20-like chaperones superfamily protein (.1) Potri.013G024900 [exp] 72 / 5e-14 AT1G54850 175 / 6e-52 HSP20-like chaperones superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10007642 pacid=23140293 polypeptide=Lus10007642 locus=Lus10007642.g ID=Lus10007642.BGIv1.0 annot-version=v1.0 ATGCTTAAGTACTTCCACCGTCAACTTATCACCATGAAACAACAAGACCAACAAGTAACCCCCATCGCCGCCACCGACGACGACAAGCTCTTCATCGCGA ACTTCATCGTCGCTAACTACCTAGCCCCCGACGTCTACGTCGACGAACCCCCCAAAATCTCCGCCGCTCAACGGCTATCCCAACGGTTCCCTCCCTACAC TCCTAACCACCTAGGCCAAAGCTCACTCACCGTCACCCAAATCCAAAGCCAATACTATTACATCCTCAGAAACTCTACCAACCCGTCTCGGATTTTTAAC CCGACCCAGTTTCACTTTTACCTCAAAGGTAAATTAATTTCACCGTGCCCTTCTGCCGCCGATTTCACCACGTTCTTCCCACTCCACATCCACAAGCATA AGCTGTCCTCGACCACTGATCAACAACATGGAATAGTTGTGATCAAGGGTATAGTTGTAATTGACGACCCGGTCGCGGGTTGGGTAGACCGTGAGGAGCT TGACCGGTTTATGCGGCTGACCGGTTTGGTTGACTTGAAGCTCGATAGGGATTCGTGGTTAAGCTATAACCGGACCATCTACGATAACCAAAGGCTGAAT TTGGGTTTGGCTGATGAGACTAACGAAGTTACTACTATGACGACGGTGATCGTTCGTGACAAACCGGTCATGTTTGAGCTGTTCGGGTTATTGTGGGATC CTGTTGTGATTGGGATCGGTTCGACCGCTTACCTTTTTCGAGTTGCACTTCCTCCTCTCCCCGACACTTCTCATACGTGCATGTGA
AA sequence Show only first row Show all	>Lus10007642 pacid=23140293 polypeptide=Lus10007642 locus=Lus10007642.g ID=Lus10007642.BGIv1.0 annot-version=v1.0 MLKYFHRQLITMKQQDQQVTPIAATDDDKLFIANFIVANYLAPDVYVDEPPKISAAQRLSQRFPPYTPNHLGQSSLTVTQIQSQYYYILRNSTNPSRIFN PTQFHFYLKGKLISPCPSAADFTTFFPLHIHKHKLSSTTDQQHGIVVIKGIVVIDDPVAGWVDREELDRFMRLTGLVDLKLDRDSWLSYNRTIYDNQRLN LGLADETNEVTTMTTVIVRDKPVMFELFGLLWDPVVIGIGSTAYLFRVALPPLPDTSHTCM

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G20870			HSP20-like chaperones superfam...		Lus10007642 [exp]	0	1
AT1G60500		DRP4C	Dynamin related protein 4C (.1...		Lus10025903 [exp]	1.4	0.9779
AT1G17020		ATSRG1, SRG1	senescence-related gene 1 (.1)		Lus10011986 [exp]	1.4	0.9795
AT5G51950			Glucose-methanol-choline (GMC)...		Lus10015012 [exp]	2.8	0.9605
AT2G44450		BGLU15	beta glucosidase 15 (.1)		Lus10031235 [exp]	3.0	0.9658
					Lus10041745 [exp]	3.5	0.9545
AT4G36810		GGPS1	geranylgeranyl pyrophosphate s...		Lus10033581 [exp]	3.9	0.9596
AT3G50470		MLA10, HR3	INTRACELLULAR MILDEW A 10, hom...		Lus10009328 [exp]	5.5	0.9426
AT5G06740			Concanavalin A-like lectin pro...		Lus10021060 [exp]	6.0	0.9389
AT1G70850		MLP34	MLP-like protein 34 (.1.2.3)		Lus10002644 [exp]	6.6	0.9397
AT4G12520			Bifunctional inhibitor/lipid-t...		Lus10010765 [exp]	8.5	0.9070

Compare expression of checked genes

Lus10007642 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.