Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G11545 468 / 2e-168 XTH8 xyloglucan endotransglucosylase/hydrolase 8 (.1) AT4G37800 269 / 5e-90 XTH7, XTR15 xyloglucan endotransglucosylase/hydrolase 7 (.1) AT5G13870 268 / 7e-90 EXGT-A4, XTH5, XTR12 endoxyloglucan transferase A4, xyloglucan endotransglucosylase/hydrolase 5 (.1) AT5G65730 262 / 2e-87 XTH6, XTR10 xyloglucan endotransglucosylase/hydrolase 6 (.1) AT2G14620 260 / 2e-86 XTH10, XTR14 xyloglucan endotransglucosylase/hydrolase 10 (.1) AT2G06850 254 / 2e-84 XTH4, EXT, EXGT-A1 endoxyloglucan transferase A1, xyloglucan endotransglucosylase/hydrolase 4 (.1) AT4G03210 250 / 1e-82 XTH9, EXGT-A6, XTR16 xyloglucan endotransglucosylase/hydrolase 9 (.1.2) AT3G23730 241 / 4e-79 XTH16 xyloglucan endotransglucosylase/hydrolase 16 (.1) AT5G57540 240 / 1e-78 AtXTH13, XTH13 xyloglucan endotransglucosylase/hydrolase 13 (.1) AT5G57530 239 / 2e-78 AtXTH12, XTH12 xyloglucan endotransglucosylase/hydrolase 12 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018365 [exp] 549 / 0 AT1G11545 510 / 0.0 xyloglucan endotransglucosylase/hydrolase 8 (.1) Lus10011052 [exp] 271 / 3e-90 AT5G13870 507 / 0.0 endoxyloglucan transferase A4, xyloglucan endotransglucosylase/hydrolase 5 (.1) Lus10003022 [exp] 269 / 7e-90 AT5G13870 506 / 0.0 endoxyloglucan transferase A4, xyloglucan endotransglucosylase/hydrolase 5 (.1) Lus10040121 [exp] 263 / 2e-87 AT5G13870 493 / 5e-178 endoxyloglucan transferase A4, xyloglucan endotransglucosylase/hydrolase 5 (.1) Lus10030923 [exp] 261 / 7e-87 AT5G13870 491 / 3e-177 endoxyloglucan transferase A4, xyloglucan endotransglucosylase/hydrolase 5 (.1) Lus10039715 [exp] 259 / 6e-86 AT4G03210 441 / 1e-157 xyloglucan endotransglucosylase/hydrolase 9 (.1.2) Lus10039643 [exp] 256 / 7e-85 AT5G65730 469 / 1e-168 xyloglucan endotransglucosylase/hydrolase 6 (.1) Lus10011597 [exp] 256 / 9e-85 AT5G65730 469 / 7e-169 xyloglucan endotransglucosylase/hydrolase 6 (.1) Lus10018503 [exp] 253 / 7e-84 AT4G03210 439 / 9e-157 xyloglucan endotransglucosylase/hydrolase 9 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G021000 [exp] 483 / 2e-174 AT1G11545 498 / 3e-180 xyloglucan endotransglucosylase/hydrolase 8 (.1) Potri.011G025800 [exp] 377 / 1e-133 AT1G11545 375 / 6e-133 xyloglucan endotransglucosylase/hydrolase 8 (.1) Potri.014G152700 [exp] 367 / 2e-129 AT1G11545 365 / 3e-128 xyloglucan endotransglucosylase/hydrolase 8 (.1) Potri.014G140300 [exp] 265 / 1e-88 AT5G13870 527 / 0.0 endoxyloglucan transferase A4, xyloglucan endotransglucosylase/hydrolase 5 (.1) Potri.007G008500 [exp] 263 / 8e-88 AT5G65730 472 / 6e-170 xyloglucan endotransglucosylase/hydrolase 6 (.1) Potri.001G071000 [exp] 261 / 9e-87 AT5G13870 504 / 0.0 endoxyloglucan transferase A4, xyloglucan endotransglucosylase/hydrolase 5 (.1) Potri.003G159700 [exp] 261 / 1e-86 AT5G13870 500 / 0.0 endoxyloglucan transferase A4, xyloglucan endotransglucosylase/hydrolase 5 (.1) Potri.019G125000 [exp] 260 / 2e-86 AT4G03210 450 / 3e-161 xyloglucan endotransglucosylase/hydrolase 9 (.1.2) Potri.009G083800 [exp] 258 / 7e-86 AT2G14620 454 / 1e-162 xyloglucan endotransglucosylase/hydrolase 10 (.1) Potri.002G060500 [exp] 253 / 9e-84 AT4G14130 424 / 3e-151 xyloglucan endotransglycosylase 7, xyloglucan endotransglucosylase/hydrolase 15 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0004 [flax] [poplar] Concanavalin PF00722 [flax] [poplar] Glyco_hydro_16 Glycosyl hydrolases family 16 CL0004 [flax] [poplar] Concanavalin PF06955 [flax] [poplar] XET_C Xyloglucan endo-transglycosylase (XET) C-terminus
Representative CDS sequence Show only first row Show all	>Lus10007645 pacid=23140286 polypeptide=Lus10007645 locus=Lus10007645.g ID=Lus10007645.BGIv1.0 annot-version=v1.0 ATGTCGGCGACCACGTCAGCACTGTCGAAAGGCGCTTTCGAAGACAACTTCAACATCATGTGGTCGAAGGAGCATTTCACTACCTCGGAAGACGGTCAGA TCTGGTACCTATCAATGGACAAAGATACAGGATGTGGGTTCCAAACCAAGGAGATGTACAGATTCGGTTGGTTCAGCATGAAGCTGAAGCTCGTCGGCGG CGATTCCGCCGGTGTCGTCACTGCTTACTACATGTGTACAGAGAATGGAGCAGGGCCGACGAGGGACGAGATTGATTTCGAGTTCCTAGGGAACCGAACG GGCCAACCGTATTTGATTCAAACGAATATTTACAAGAACGGAACCGGAAACAGAGAAATGCGGCATGAGTTATGGTTCGATCCGACCGAAGATTTTCATT CTTACTCGGTTCTATGGAATGATCACCAGCTAGTGTTCTTCGTGGATAGGGTGCCGATCAGGGTGATGAAGAACAACGGGAAACCGAACAACTTCTTCCC CAACGAGAAGCCGATGTACCTGTTCTCGAGCATATGGAACGCGGACGACTGGGCGACGAGAGGAGGGCTGGAGAAGACGGACTGGAAGAAGTCGCCGTTC GTGTCGGCGTACAAGGACTTCAGCGTCGAGGGGTGCCAATGGGAGGATCCGTACCCAAAGTGCGTGTCGACGACGACGGAGAATTGGTGGGACAAGAAGG ACGCGTGGCACTTGTCGGATTCGCAGAAGCTCGATTTCGCGTGGGTCGAGAGGAACATGGTGATTTACGATTACTGTAAGGATACAGAGCGGTTTCCCAC GTTGCCGGAGGAGTGCTCTTTGAGCCCATGGGAGTGA
AA sequence Show only first row Show all	>Lus10007645 pacid=23140286 polypeptide=Lus10007645 locus=Lus10007645.g ID=Lus10007645.BGIv1.0 annot-version=v1.0 MSATTSALSKGAFEDNFNIMWSKEHFTTSEDGQIWYLSMDKDTGCGFQTKEMYRFGWFSMKLKLVGGDSAGVVTAYYMCTENGAGPTRDEIDFEFLGNRT GQPYLIQTNIYKNGTGNREMRHELWFDPTEDFHSYSVLWNDHQLVFFVDRVPIRVMKNNGKPNNFFPNEKPMYLFSSIWNADDWATRGGLEKTDWKKSPF VSAYKDFSVEGCQWEDPYPKCVSTTTENWWDKKDAWHLSDSQKLDFAWVERNMVIYDYCKDTERFPTLPEECSLSPWE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G11545		XTH8	xyloglucan endotransglucosylas...		Lus10007645 [exp]	0	1
AT5G41460			Protein of unknown function (D...		Lus10018123 [exp]	2.8	0.9628
AT1G69180	YABBY	CRC	CRABS CLAW, Plant-specific tra...		Lus10036811 [exp]	3.9	0.9478
AT5G67360		ARA12	Subtilase family protein (.1)		Lus10008921 [exp]	9.5	0.9397
AT1G63460		ATGPX8	glutathione peroxidase 8 (.1)		Lus10008534 [exp]	9.5	0.9291
AT2G39770		VTC1, SOZ1, GMP...	VITAMIN C DEFECTIVE 1, SENSITI...		Lus10004699 [exp]	9.8	0.9276
AT2G10940			Bifunctional inhibitor/lipid-t...		Lus10027704 [exp]	12.6	0.9350
AT4G23180		RLK4, CRK10	cysteine-rich RLK (RECEPTOR-li...		Lus10034971 [exp]	18.0	0.9542
AT3G11930			Adenine nucleotide alpha hydro...		Lus10029310 [exp]	23.2	0.9529
					Lus10026149 [exp]	27.1	0.9499
AT3G11590			unknown protein		Lus10013311 [exp]	27.5	0.9250

Compare expression of checked genes

Lus10007645 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.