Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G54770 538 / 0 THI4, TZ, THI1 THIAZOLE REQUIRING, THIAMINE4, thiazole biosynthetic enzyme, chloroplast (ARA6) (THI1) (THI4) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018364 [exp] 447 / 4e-160 AT5G54770 379 / 2e-133 THIAZOLE REQUIRING, THIAMINE4, thiazole biosynthetic enzyme, chloroplast (ARA6) (THI1) (THI4) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G020500 [exp] 555 / 0 AT5G54770 505 / 0.0 THIAZOLE REQUIRING, THIAMINE4, thiazole biosynthetic enzyme, chloroplast (ARA6) (THI1) (THI4) (.1) Potri.011G025200 [exp] 553 / 0 AT5G54770 541 / 0.0 THIAZOLE REQUIRING, THIAMINE4, thiazole biosynthetic enzyme, chloroplast (ARA6) (THI1) (THI4) (.1) Potri.011G134900 [exp] 541 / 0 AT5G54770 543 / 0.0 THIAZOLE REQUIRING, THIAMINE4, thiazole biosynthetic enzyme, chloroplast (ARA6) (THI1) (THI4) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF01946 [flax] [poplar] Thi4 Thi4 family
Representative CDS sequence Show only first row Show all	>Lus10007646 pacid=23140304 polypeptide=Lus10007646 locus=Lus10007646.g ID=Lus10007646.BGIv1.0 annot-version=v1.0 ATGGCTGCCGCCGCCACCTTAACCACCTCCCTCTCCTCCACCATCAAAACCCAATTCCTCTCCGACACCAAATCCTCCCCCTCCTCCGCCTTCGCCGCCG CCGCCTCCTTCCGCCCTCTCCGATCCAACTTCGCCGTCTCCGCCGTGTCGACGCCGTACGATCTCAACTCGTTCAAATTCTCCCCGATCAAGGAGTCGAT CGTCTCCCGCGAGATGACCCGCCGCTACATGACTGATATGCTGACCTACGCCGACACCGACGTCATCGTCGTCGGCGCCGGCTCCGCCGGGCTTACGTGC GCATACGAACTCAGCAAGAACCCCAACATCAGGATCGCGATCATCGAGCAGTCCGTCAGCCCCGGCGGCGGTGCGTGGCTCGGCGGCCAGCTCTTCTCCG CCATGGTCGTCCGGAAGCCCGCTCACTTGTTCCTCGACGAGATCGAAGTCGAATACGACGAGCAGGACGACTACGTGGTGATCAAGCACGCTGCCCTGTT CACCTCAACGATCATGAGCAAGCTGCTGGCGAAGCCGAACGTGAAGCTGTTCAACGCGGTGGCCGCGGAGGATCTGATAGTGAAGGGAGGCAGAGTGGGC GGAGTGGTGACCAACTGGGCGCTGGTTTCGATGAACCACGACACACAGTCGTGCATGGACCCCAATGTGATGGAGGCTAAGGTGGTCGTGAGCTCTTGCG GCCACGATGGGCCGTTCGGAGCCACGGGAGTGAAGAGGTTGAAGAGCATCGGGCTGATCGACAATGTCCCTGGGATGAAGGCCCTCGACATGAACGCCGC GGAGGATGCGATCGTTAGGCTGACTAGGGAGGTTGTCCCTGGGATGATCGTTACTGGGATGGAGGTTGCTGAGATTGATGGTGCTCCAAGAATGGGACCC ACATTCGGGGCGATGATGATCTCCGGCCAGAAGGCGGCGCACTTGGCATTGAAGGCCTTGGGAGAGGAGAATGCTTTGGACGGGGCGGGAGGAGTGAACG GGAAGGTGCCCATCCCGGAGTTTGTCCTTGCCGAGGCCGACAACGGGGAGACTGTGGATGCTTAG
AA sequence Show only first row Show all	>Lus10007646 pacid=23140304 polypeptide=Lus10007646 locus=Lus10007646.g ID=Lus10007646.BGIv1.0 annot-version=v1.0 MAAAATLTTSLSSTIKTQFLSDTKSSPSSAFAAAASFRPLRSNFAVSAVSTPYDLNSFKFSPIKESIVSREMTRRYMTDMLTYADTDVIVVGAGSAGLTC AYELSKNPNIRIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHLFLDEIEVEYDEQDDYVVIKHAALFTSTIMSKLLAKPNVKLFNAVAAEDLIVKGGRVG GVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPFGATGVKRLKSIGLIDNVPGMKALDMNAAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGP TFGAMMISGQKAAHLALKALGEENALDGAGGVNGKVPIPEFVLAEADNGETVDA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G54770		THI4, TZ, THI1	THIAZOLE REQUIRING, THIAMINE4,...		Lus10007646 [exp]	0	1
AT5G54770		THI4, TZ, THI1	THIAZOLE REQUIRING, THIAMINE4,...		Lus10018364 [exp]	1.0	0.9533
AT3G06483		ATPDHK, PDK	pyruvate dehydrogenase kinase ...		Lus10017117 [exp]	1.4	0.9376
AT3G19660			unknown protein		Lus10033765 [exp]	2.0	0.9116
AT3G52060			Core-2/I-branching beta-1,6-N-...		Lus10008954 [exp]	3.9	0.9199
AT4G39090		EMB3005, RD19A,...	RESPONSIVE TO DEHYDRATION 19A,...		Lus10002103 [exp]	7.5	0.8800
AT4G03510		ATRMA1, RMA1	RING membrane-anchor 1 (.1.2)		Lus10033697 [exp]	7.9	0.8956
AT2G33855			unknown protein		Lus10013983 [exp]	9.2	0.9095
AT3G43110			unknown protein		Lus10020796 [exp]	10.4	0.8865
AT2G30100			pentatricopeptide (PPR) repeat...		Lus10042274 [exp]	11.0	0.8929
AT1G02630			Nucleoside transporter family ...		Lus10030104 [exp]	11.4	0.8836

Compare expression of checked genes

Lus10007646 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.