Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G61790 442 / 1e-156 Oligosaccharyltransferase complex/magnesium transporter family protein (.1) AT1G11560 354 / 7e-122 Oligosaccharyltransferase complex/magnesium transporter family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018363 [exp] 610 / 0 AT1G61790 470 / 2e-167 Oligosaccharyltransferase complex/magnesium transporter family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G025700 [exp] 414 / 2e-145 AT1G61790 397 / 1e-138 Oligosaccharyltransferase complex/magnesium transporter family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0172 [flax] [poplar] Thioredoxin PF04756 [flax] [poplar] OST3_OST6 OST3 / OST6 family, transporter family
Representative CDS sequence Show only first row Show all	>Lus10007647 pacid=23140279 polypeptide=Lus10007647 locus=Lus10007647.g ID=Lus10007647.BGIv1.0 annot-version=v1.0 ATGGCGATCTCCACCAAGAAATCGGATCACTATTTCCTTCTCCTCCTCCTCACAATCGCCACCGTACTCACTGTCTCCGCCGCCACCTCCTCCTCCGATC TAGTCAGCGAGCTTCTCTCCCTCCAATCCCAATCCAAATCGGGAGTAATCCCCTTCGACGACCACTCGATCTCCCCATTCCTAACCCCCACAAAGACACC GCGGCCGTACTCCCTCTTAGTCTTCTTCGACGCCACGCAGCTCCACGACAAAAGCGAGCTCCGCCTCAAGGAGCTCCACCGCGAATTCTCCATCCTCGCA TCTTCCTTCATCGCCAACAACCCTAACAACGGCAAGCTCTTCTTCTGCGAGATCGAGTTCAAAGAATCGCAATCATCCTTCTCCCTCTTCGGAGTCCAAT CCTTACCTCACATCCGTCTGATCTCCCCCGATGTCAAGAACCCAAAGCAATCGGAGCAAATGGACCAGGGCGATTTCTCAAGAATGGCTGAATCCATGGC CGAGTTCGTTGAAACTCGGACGAAGATCATCGTCGGTGAAATCCACCGGCCTCCGTTTGTTTCCAGGACTCAGCTAGGGGTGATAATCGTTTTGTTTCTG TTATGGACGCCGTACGCTGTGAAGAAGGTTATTGCAGGGCAGACGTTGCTTCACGATCCGAAAATCTGGCTTGCTGGGTCAGTGTTTGTTTACTTCTTCA GCGTCTCTGGTGCGATGCATAACATTATTCGTAAGATGCCTATGTTCATGGTGGATCGTAACGATCCGAACAAGCTGGTGTTCTTCTACCAAGGGTCTGG GATGCAGCTGGGAGCTGAAGGTTTTGCTGTTGGGTTTCTTTACACTGTTGTTGGGTTACTGCTAGCTTTGATGACTCATGGACTTGATAAGGTGAAGAAC GTAACTACTCAGAGGGTGACGATGATTGCTGCATTGTTAGTTTGCTTCTGGTCAGTCAACAAGGTTGTGTATTTGGATAATTGGAAGACTGGTTATGGGA TTCATACCTTCTGGCCTAGGAGCTGGAGCTGA
AA sequence Show only first row Show all	>Lus10007647 pacid=23140279 polypeptide=Lus10007647 locus=Lus10007647.g ID=Lus10007647.BGIv1.0 annot-version=v1.0 MAISTKKSDHYFLLLLLTIATVLTVSAATSSSDLVSELLSLQSQSKSGVIPFDDHSISPFLTPTKTPRPYSLLVFFDATQLHDKSELRLKELHREFSILA SSFIANNPNNGKLFFCEIEFKESQSSFSLFGVQSLPHIRLISPDVKNPKQSEQMDQGDFSRMAESMAEFVETRTKIIVGEIHRPPFVSRTQLGVIIVLFL LWTPYAVKKVIAGQTLLHDPKIWLAGSVFVYFFSVSGAMHNIIRKMPMFMVDRNDPNKLVFFYQGSGMQLGAEGFAVGFLYTVVGLLLALMTHGLDKVKN VTTQRVTMIAALLVCFWSVNKVVYLDNWKTGYGIHTFWPRSWS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G61790			Oligosaccharyltransferase comp...		Lus10007647 [exp]	0	1
AT3G08640			Protein of unknown function (D...		Lus10003242 [exp]	1.0	0.9682
AT4G29870			Oligosaccharyltransferase comp...		Lus10035623 [exp]	1.4	0.9616
AT2G32380			Transmembrane protein 97, pred...		Lus10027174 [exp]	1.7	0.9615
AT5G42130		AtMfl1	MitoFerrinLike1, Mitochondrial...		Lus10029770 [exp]	2.2	0.9431
AT5G01410		PDX1, ATPDX1.3,...	REDUCED SUGAR RESPONSE 4, ARAB...		Lus10038318 [exp]	2.8	0.9324
AT4G32390			Nucleotide-sugar transporter f...		Lus10002023 [exp]	2.8	0.9449
AT3G08590		iPGAM2	2,3-biphosphoglycerate-indepen...		Lus10031309 [exp]	3.6	0.9229
AT3G13160			Tetratricopeptide repeat (TPR)...		Lus10007620 [exp]	3.7	0.9350
AT3G59390			unknown protein		Lus10004383 [exp]	4.6	0.9142
AT4G13940		MEE58, EMB1395,...	MATERNAL EFFECT EMBRYO ARREST ...		Lus10022560 [exp]	4.9	0.9365

Compare expression of checked genes

Lus10007647 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.