Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G04900 87 / 4e-22 RIC10 ROP-interactive CRIB motif-containing protein 10 (.1) AT4G28556 82 / 1e-19 RIC7 PAK-box/P21-Rho-binding family protein (.1) AT4G21745 78 / 2e-18 PAK-box/P21-Rho-binding family protein (.1) AT2G20430 78 / 4e-18 RIC6 ROP-interactive CRIB motif-containing protein 6 (.1) AT2G33460 75 / 1e-16 RIC1 ROP-interactive CRIB motif-containing protein 1 (.1) AT1G04450 72 / 9e-16 RIC3 ROP-interactive CRIB motif-containing protein 3 (.1) AT3G23380 70 / 4e-15 RIC5 ROP-interactive CRIB motif-containing protein 5 (.1) AT1G03982 63 / 2e-12 PAK-box/P21-Rho-binding family protein (.1) AT1G61795 59 / 1e-11 PAK-box/P21-Rho-binding family protein (.1) AT5G16490 43 / 2e-05 RIC4 ROP-interactive CRIB motif-containing protein 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018362 [exp] 256 / 4e-88 AT4G04900 94 / 2e-24 ROP-interactive CRIB motif-containing protein 10 (.1) Lus10006763 [exp] 139 / 6e-42 AT4G04900 81 / 2e-19 ROP-interactive CRIB motif-containing protein 10 (.1) Lus10011805 [exp] 79 / 5e-18 AT2G33460 97 / 2e-24 ROP-interactive CRIB motif-containing protein 1 (.1) Lus10003625 [exp] 72 / 4e-16 AT4G28556 94 / 3e-24 PAK-box/P21-Rho-binding family protein (.1) Lus10020060 [exp] 72 / 2e-15 AT3G54200 72 / 4e-15 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10008243 [exp] 71 / 2e-15 AT4G28556 94 / 3e-24 PAK-box/P21-Rho-binding family protein (.1) Lus10021168 [exp] 68 / 2e-13 AT2G33460 81 / 3e-17 ROP-interactive CRIB motif-containing protein 1 (.1) Lus10021974 [exp] 40 / 0.0002 AT2G33460 51 / 4e-08 ROP-interactive CRIB motif-containing protein 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G025300 [exp] 144 / 3e-44 AT4G04900 89 / 5e-23 ROP-interactive CRIB motif-containing protein 10 (.1) Potri.004G020650 [exp] 136 / 3e-41 AT4G04900 73 / 1e-16 ROP-interactive CRIB motif-containing protein 10 (.1) Potri.002G035500 [exp] 95 / 5e-24 AT2G20430 105 / 1e-27 ROP-interactive CRIB motif-containing protein 6 (.1) Potri.005G227500 [exp] 90 / 4e-22 AT4G28556 106 / 5e-28 PAK-box/P21-Rho-binding family protein (.1) Potri.010G069500 [exp] 90 / 7e-22 AT4G28556 99 / 1e-24 PAK-box/P21-Rho-binding family protein (.1) Potri.008G168900 [exp] 84 / 5e-20 AT2G33460 101 / 4e-26 ROP-interactive CRIB motif-containing protein 1 (.1) Potri.002G233400 [exp] 56 / 5e-10 AT5G16490 89 / 1e-22 ROP-interactive CRIB motif-containing protein 4 (.1) Potri.014G147000 [exp] 46 / 1e-06 AT5G16490 76 / 8e-18 ROP-interactive CRIB motif-containing protein 4 (.1) Potri.013G086600 [exp] 42 / 7e-05 AT5G16490 109 / 7e-31 ROP-interactive CRIB motif-containing protein 4 (.1) Potri.019G053300 [exp] 40 / 0.0002 AT5G16490 108 / 2e-30 ROP-interactive CRIB motif-containing protein 4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00786 [flax] [poplar] PBD P21-Rho-binding domain
Representative CDS sequence Show only first row Show all	>Lus10007648 pacid=23140297 polypeptide=Lus10007648 locus=Lus10007648.g ID=Lus10007648.BGIv1.0 annot-version=v1.0 ATGGGTACCAACAAGATTAAAGTGTTCTACAAGGGTTTCAAGTTCATCACCCAAATCTTTGTTGTGAAGGAGAGGGAGTTGGAAATTGGGTACCCAACTG ATGTTAAACATGTTGCTCATATTGGTTGGGATGGTGCCTCTGGTAATCCACCCAGCTGGATGAGTGAGTACAAGACAGCTCCTGAATTCTCCTCCTCAAA GACTTTCAATAATGGTGGAGTCCCAAGAGAGTCCAATTCAACGTCCTTTTCTCCATGGTCCTCTCAAGATTTTAGTGAATCAATGGGACTCCATCAGCTG CCAGGATCAAGCATGTTTGAACAGAACATTCCCAATTCAGACCCACCAAACATCCCAAAGAAACACAAGAGGAAGAAGAAGACTTCTTCGACATCAGCAT CAACAATTTCTCCTCCTAAAGGCTCAACATCATCGTCGCCTCCAATGTCTTCATCTTCCTTGACCAAACCCTTTCGATCTTCAAAGAAGAAAGCAATGTA CCACGAGCTAGACCACCCTACCGTGAACGTGCAAGCATAG
AA sequence Show only first row Show all	>Lus10007648 pacid=23140297 polypeptide=Lus10007648 locus=Lus10007648.g ID=Lus10007648.BGIv1.0 annot-version=v1.0 MGTNKIKVFYKGFKFITQIFVVKERELEIGYPTDVKHVAHIGWDGASGNPPSWMSEYKTAPEFSSSKTFNNGGVPRESNSTSFSPWSSQDFSESMGLHQL PGSSMFEQNIPNSDPPNIPKKHKRKKKTSSTSASTISPPKGSTSSSPPMSSSSLTKPFRSSKKKAMYHELDHPTVNVQA

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G04900		RIC10	ROP-interactive CRIB motif-con...		Lus10007648 [exp]	0	1
AT4G13590			Uncharacterized protein family...		Lus10023685 [exp]	3.2	0.8578
AT3G13690			Protein kinase protein with ad...		Lus10011656 [exp]	3.5	0.8402
AT4G11410			NAD(P)-binding Rossmann-fold s...		Lus10032281 [exp]	9.5	0.7817
AT1G22630			unknown protein		Lus10018614 [exp]	12.6	0.8642
AT2G35450			catalytics;hydrolases (.1)		Lus10037047 [exp]	12.6	0.8429
AT5G38290			Peptidyl-tRNA hydrolase family...		Lus10031327 [exp]	17.6	0.8412
AT4G14660		NRPE7	RNA polymerase Rpb7-like, N-te...		Lus10024250 [exp]	18.3	0.8164
AT5G16140			Peptidyl-tRNA hydrolase family...		Lus10031901 [exp]	20.1	0.8461
AT5G13410			FKBP-like peptidyl-prolyl cis-...		Lus10009828 [exp]	25.4	0.8352
AT3G07568			unknown protein		Lus10016081 [exp]	25.8	0.7670

Compare expression of checked genes

Lus10007648 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.