Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G54200 77 / 1e-17 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) AT2G46150 60 / 4e-11 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) AT3G05975 59 / 9e-11 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) AT4G13270 57 / 3e-10 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) AT3G44380 52 / 2e-08 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) AT1G64450 41 / 0.0002 Glycine-rich protein family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018361 [exp] 315 / 6e-111 AT3G54200 91 / 1e-22 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10006764 [exp] 239 / 2e-81 AT3G54200 79 / 5e-18 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10020060 [exp] 230 / 4e-77 AT3G54200 72 / 4e-15 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10035612 [exp] 94 / 2e-23 AT3G54200 142 / 8e-42 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10003238 [exp] 92 / 4e-23 AT3G54200 143 / 3e-42 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10025649 [exp] 82 / 1e-19 AT3G54200 152 / 2e-46 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10043084 [exp] 82 / 2e-19 AT3G54200 141 / 2e-41 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10018185 [exp] 81 / 5e-19 AT3G54200 153 / 9e-47 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10032671 [exp] 81 / 7e-19 AT3G54200 141 / 1e-41 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G025100 [exp] 135 / 4e-40 AT2G46150 77 / 3e-17 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Potri.002G230400 [exp] 128 / 2e-37 AT2G46150 82 / 3e-19 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Potri.016G142300 [exp] 103 / 9e-28 AT3G54200 162 / 3e-50 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Potri.006G112800 [exp] 86 / 4e-21 AT3G54200 159 / 7e-49 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Potri.002G165100 [exp] 76 / 3e-17 AT2G46150 184 / 1e-58 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Potri.006G112700 [exp] 69 / 2e-14 AT3G05975 127 / 6e-37 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Potri.016G142200 [exp] 62 / 4e-12 AT3G05975 105 / 2e-28 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Potri.001G098200 [exp] 60 / 2e-11 AT1G64065 102 / 2e-27 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Potri.003G133400 [exp] 58 / 2e-10 AT2G46150 164 / 7e-51 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Potri.001G098100 [exp] 57 / 4e-10 AT2G46150 171 / 2e-53 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0159 [flax] [poplar] E-set PF03168 [flax] [poplar] LEA_2 Late embryogenesis abundant protein
Representative CDS sequence Show only first row Show all	>Lus10007649 pacid=23140327 polypeptide=Lus10007649 locus=Lus10007649.g ID=Lus10007649.BGIv1.0 annot-version=v1.0 ATGGGTTGTTGTCGCCGTCCAGGCCGCCTGAAGCTCTGCTTCCTCATAACAACAATCCTCCTCCTAATCCTCGTCGTCGCCGCCGTCATCATCTTCTTCA CCGTCCTTAAACCCAAACAGCCCACAATCACCACCAAATCACTCACCCTCGACCGGGTCGAGTACTCTCTCAACCCAAAACCCTTCCTCAACTTCACATT AGGGATCGTCGTCGAAGTCAAGAACCCCAACTACGGCGACTTCCGATACTCCGGCAGCACCGCCTACTTGGTCTACCGGGGAAACCTCGTCGGAGTCTCC CCCATCCCCGCCGGTAACTCGAAGGCCAGGTCTACCGATGAGATCCGGACCAATGTTACGCTGATGGCAGGGGAGTTTCTGACCGATTTGGCCTTCGTCG GGGATCTGATCGCCAGGGTGTTGAATTTCACGTCGACGTCGTCGGTGCATGGGAAGGCGGAGATGTTTAAGGTTTTGAAGGCTGAGATTACGAGTAACTC CACGTGTGAGATTTCGGTTCATGTTGGGACTCAGAAGATGGATTCCAGTTGTAACACAGTCGTCATCCGGTAA
AA sequence Show only first row Show all	>Lus10007649 pacid=23140327 polypeptide=Lus10007649 locus=Lus10007649.g ID=Lus10007649.BGIv1.0 annot-version=v1.0 MGCCRRPGRLKLCFLITTILLLILVVAAVIIFFTVLKPKQPTITTKSLTLDRVEYSLNPKPFLNFTLGIVVEVKNPNYGDFRYSGSTAYLVYRGNLVGVS PIPAGNSKARSTDEIRTNVTLMAGEFLTDLAFVGDLIARVLNFTSTSSVHGKAEMFKVLKAEITSNSTCEISVHVGTQKMDSSCNTVVIR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G54200			Late embryogenesis abundant (L...		Lus10007649 [exp]	0	1
AT2G42840		PDF1	protodermal factor 1 (.1)		Lus10007352 [exp]	1.0	0.9867
AT5G53390			O-acyltransferase (WSD1-like) ...		Lus10004008 [exp]	3.7	0.9779
AT5G44940			F-box/RNI-like superfamily pro...		Lus10000726 [exp]	4.0	0.9831
AT1G02335		GL22	germin-like protein subfamily ...		Lus10023350 [exp]	4.9	0.9830
AT2G28610	HD	PRS1, PRS, WOX3	WUSCHEL RELATED HOMEOBOX 3, PR...		Lus10038480 [exp]	5.1	0.9362
AT3G59030		ATTT12, TT12	TRANSPARENT TESTA 12, A. THALI...		Lus10033596 [exp]	6.0	0.9554
AT3G26040			HXXXD-type acyl-transferase fa...		Lus10036927 [exp]	6.0	0.9819
AT1G51460		ABCG13	ATP-binding cassette G13, ABC-...		Lus10000339 [exp]	6.9	0.9715
AT5G19260		FAF3	FANTASTIC FOUR 3, Protein of u...		Lus10042576 [exp]	7.1	0.9718
AT5G61850	LFY	LFY3, LFY	LEAFY 3, floral meristem ident...		Lus10016732 [exp]	7.7	0.9805

Compare expression of checked genes

Lus10007649 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.