Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G28237 449 / 9e-156 Pyridoxal-5'-phosphate-dependent enzyme family protein (.1) AT5G54810 430 / 3e-148 ATTSB1, TRP2, TRPB, TSB1 TRYPTOPHAN BIOSYNTHESIS B, TRYPTOPHAN BIOSYNTHESIS 2, tryptophan synthase beta-subunit 1 (.1) AT4G27070 426 / 9e-147 TSB2 tryptophan synthase beta-subunit 2 (.1) AT5G38530 67 / 8e-12 TSBtype2 tryptophan synthase beta type 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10043059 [exp] 435 / 7e-150 AT4G27070 766 / 0.0 tryptophan synthase beta-subunit 2 (.1) Lus10011154 [exp] 432 / 6e-149 AT4G27070 766 / 0.0 tryptophan synthase beta-subunit 2 (.1) Lus10018358 [exp] 358 / 4e-120 AT5G28237 555 / 0.0 Pyridoxal-5'-phosphate-dependent enzyme family protein (.1) Lus10008278 [exp] 115 / 1e-31 AT5G28237 104 / 3e-28 Pyridoxal-5'-phosphate-dependent enzyme family protein (.1) Lus10000306 [exp] 64 / 1e-10 AT5G38530 779 / 0.0 tryptophan synthase beta type 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G420300 [exp] 432 / 4e-149 AT4G27070 754 / 0.0 tryptophan synthase beta-subunit 2 (.1) Potri.011G136000 [exp] 388 / 9e-132 AT5G54810 755 / 0.0 TRYPTOPHAN BIOSYNTHESIS B, TRYPTOPHAN BIOSYNTHESIS 2, tryptophan synthase beta-subunit 1 (.1) Potri.011G024900 [exp] 307 / 2e-100 AT5G28237 586 / 0.0 Pyridoxal-5'-phosphate-dependent enzyme family protein (.1) Potri.017G109600 [exp] 62 / 3e-10 AT5G38530 828 / 0.0 tryptophan synthase beta type 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF00291 [flax] [poplar] PALP Pyridoxal-phosphate dependent enzyme
Representative CDS sequence Show only first row Show all	>Lus10007651 pacid=23140284 polypeptide=Lus10007651 locus=Lus10007651.g ID=Lus10007651.BGIv1.0 annot-version=v1.0 ATGAACATGCTCAACCAAGCTTGCAAACCTACCTTTCAGCTACTGCGCGATTCGAACCGGAACTCGATGATGATCAGTTCCAAGAGATCATCAAGAGTGG CTACTTGTAGTAATCTTGTAGTTAATGGTCATGTGTCGGCCAGCTCGGCTCGGCTGCAGTCAGCTGATGTCGCTAGTTGTCGTCCTATGTTGTTTGACGA CGACAAGGCTTCCATGTCGGGGAAGTTCGGTAGGTTCGGTGGCACTTTCGTCCCTGAGACACTCATCTCTTGTCTCTCTGAGCTTGAAGCTCTGTTTCAC CGCCTTCTCAAGGATCCCCAGTTTCAGGAGGAGCTAAGCACAACACTGAAAGAATACGTAGGAAGGGAGACCCCACTATACTTCGCTCAGCGTCTCACGG CCCACTACAAGGCTCAAAACATGGGCCGGGGCCCAGACATCTACATCAAAAGGGAAGACATGACGCACTATGGGTCCCACAAGATGAACAACGCGATAGC GCAGGCGATGATCGCCAAACGGATGGGACTCAGCTCCGTCGTGGCGGCGACCGGTGCCGGCCAGCACGGCGTCGGCACCGCCGCCGCCTGCCCCGANNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNCGGCCTCAATTGCGCAGTCTTCATGGGCAGGCGGGACATGGCCCGACAGCCATCAAACGTAGAGCTGATGAAG CTCCTGGCGGCGGAGCTGCGGTAGGACCGCATCCGTGTCCAGTTATGGTACGGGAGTTTCAGTCTGTGATCGGAAAGGAGACTCGGCGGCAGGCGGCGGA GAAGTGGGGCGGTATGCCGGATGTCGTCTTGGCATGCATCGGGAGTGGGTCTAATGCTTTAGGGATGTTTCATGAGTTTGTTGAGGATCCCGAGGTGAGG CTGATCGGAGTTGAGGCGGCAGGGTTTGGACTGAATAGCGGGAAACACTCGGCGACTCTCGCTGCCGGTGAAGTTGGGGTTTATCATGGAGCTATGAGTT ACTTGTTGCAGGATGATGAAGGGCAAATCATCTGCCCACATTCCATTGGTGTCGGGTTGGAATATCCAGGGGTAGCGCCCGAGTTGAGCTACCTTAAAGA GTCAGGGAGGATGGAGTATTACTCTGCGACGGACGAGGAGGCGGTCCATGCATGCAAAAGGGTAGCGAGATTAGAAGGCATAATCCCAGCGCTTGAAGCT GCTCATGCATTTGCATACTTGGAGAGGCTTTCCCCTAGCTTGGCCGATGGGACGAAAGTCATCGTAAATTGCAGCGGCCGGGGCGATAAAGATGCTAACG CAATCAACAGTTTCTAG
AA sequence Show only first row Show all	>Lus10007651 pacid=23140284 polypeptide=Lus10007651 locus=Lus10007651.g ID=Lus10007651.BGIv1.0 annot-version=v1.0 MNMLNQACKPTFQLLRDSNRNSMMISSKRSSRVATCSNLVVNGHVSASSARLQSADVASCRPMLFDDDKASMSGKFGRFGGTFVPETLISCLSELEALFH RLLKDPQFQEELSTTLKEYVGRETPLYFAQRLTAHYKAQNMGRGPDIYIKREDMTHYGSHKMNNAIAQAMIAKRMGLSSVVAATGAGQHGVGTAAACPXX XXXXXXXXXRPQLRSLHGQAGHGPTAIKRRADEAPGGGAAVGPHPCPVMVREFQSVIGKETRRQAAEKWGGMPDVVLACIGSGSNALGMFHEFVEDPEVR LIGVEAAGFGLNSGKHSATLAAGEVGVYHGAMSYLLQDDEGQIICPHSIGVGLEYPGVAPELSYLKESGRMEYYSATDEEAVHACKRVARLEGIIPALEA AHAFAYLERLSPSLADGTKVIVNCSGRGDKDANAINSF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G28237			Pyridoxal-5'-phosphate-depende...		Lus10007651 [exp]	0	1
AT4G16740		ATTPS03	terpene synthase 03 (.1.2)		Lus10007624 [exp]	3.3	0.8954
AT1G20925			Auxin efflux carrier family pr...		Lus10030715 [exp]	5.7	0.8316
AT4G25640		FFT, ATDTX35	FLOWER FLAVONOID TRANSPORTER, ...		Lus10039263 [exp]	7.7	0.8372
AT5G56750		NDL1	N-MYC downregulated-like 1 (.1...		Lus10026433 [exp]	8.4	0.8175
AT5G13930		ATCHS, TT4, CHS	TRANSPARENT TESTA 4, CHALCONE ...		Lus10012586 [exp]	10.0	0.8288
AT5G24470		APRR5	pseudo-response regulator 5 (....		Lus10023230 [exp]	11.0	0.7952
AT3G26510			Octicosapeptide/Phox/Bem1p fam...		Lus10036862 [exp]	11.5	0.8264
AT1G69850		NTL1, ATNRT1:2	nitrate transporter 1:2 (.1)		Lus10005417 [exp]	13.5	0.8248
AT5G06900		CYP93D1	"cytochrome P450, family 93, s...		Lus10005878 [exp]	14.3	0.8053
AT2G20870			cell wall protein precursor, p...		Lus10018569 [exp]	15.0	0.8272

Compare expression of checked genes

Lus10007651 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.