Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G04885 326 / 3e-98 PCFS4 PCF11P-similar protein 4 (.1) AT1G66500 163 / 2e-43 C2H2ZnF Pre-mRNA cleavage complex II (.1) AT5G43620 160 / 1e-42 Pre-mRNA cleavage complex II (.1) AT2G36480 129 / 2e-30 ENTH/VHS family protein (.1.2.3) AT2G36485 56 / 1e-08 ENTH/VHS family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018357 [exp] 1575 / 0 AT4G04885 653 / 0.0 PCF11P-similar protein 4 (.1) Lus10006766 [exp] 870 / 0 AT4G04885 650 / 0.0 PCF11P-similar protein 4 (.1) Lus10020058 [exp] 458 / 2e-147 AT4G04885 633 / 0.0 PCF11P-similar protein 4 (.1) Lus10014370 [exp] 189 / 2e-49 AT2G36480 248 / 2e-69 ENTH/VHS family protein (.1.2.3) Lus10035573 [exp] 188 / 6e-49 AT2G36480 362 / 4e-110 ENTH/VHS family protein (.1.2.3) Lus10023867 [exp] 189 / 7e-49 AT2G36480 246 / 2e-68 ENTH/VHS family protein (.1.2.3) Lus10027715 [exp] 183 / 4e-47 AT2G36480 363 / 2e-110 ENTH/VHS family protein (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G020300 [exp] 890 / 0 AT4G04885 386 / 9e-120 PCF11P-similar protein 4 (.1) Potri.011G024800 [exp] 862 / 0 AT4G04885 364 / 1e-111 PCF11P-similar protein 4 (.1) Potri.006G115600 [exp] 187 / 2e-48 AT2G36480 268 / 3e-76 ENTH/VHS family protein (.1.2.3) Potri.017G017800 [exp] 164 / 2e-42 AT4G04885 194 / 3e-53 PCF11P-similar protein 4 (.1) Potri.007G134000 [exp] 104 / 4e-23 AT4G04885 101 / 2e-22 PCF11P-similar protein 4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF04818 [flax] [poplar] CID CID domain
Representative CDS sequence Show only first row Show all	>Lus10007652 pacid=23140336 polypeptide=Lus10007652 locus=Lus10007652.g ID=Lus10007652.BGIv1.0 annot-version=v1.0 ATGTCAACAAACGACCACCTCCCGCCGCAGAAGCCTCCGCCGCCGACGCCGATTGTCGATAAGTTCAAGGCCATGTTGAAGCAACGGGCCGTGCAGGCTA GTAGATTCTACGACGAAAATGACGGGGGAGGACTTGTCGATGACGTGGTGGAGCTTTACGAGTTGATGCTCTCCGAATTGACTTTCAACTCCAAGCCTAT CATCACTGAATTGACAATCATTGCCGGAGACCAGCGAGAGTATGGAGAGGGAATCGCCGACGCGATCTGTGCTCGAATTATTGAGGCACCTGCTAATCAG AAACTGCCTTCTTTATACCTGGTAGATAGTATTGTTAAGAACATTGGTGAAGACTATGCTCTGTATTTTTCTTCACGGTTGCCTGAGGTTTTCTGTGAGG CTTATAGACAAGTAGATCCAAGCCTCTGTCCTTCCATGCGGCATCTTTTTGGTACTTGGTCAAGAGTGTTTCCAACTTCTGTTCTTCGTAAGATTGAGAT CCAACTACGGTTTTCCCCCGAAGTTCACAATCAATCTTCTGGCTTGAATCCACTGAGGGCTTCTGAGGCACCACGACCTACGCATGGCATACATGTGAAT CCGAAGTACTTGCATCAGTTAGAACAATCAACTTCAGAGAATGTGGGAGCCCAAAGATTAAAGTCTCATGGAGCTAATAAGGTGCTACAGTCTTCAAATT CCAGGTTTCCAAGACCGTTGTCACCTGCAGCTGAGAGGCCATTATCTTCAGATGTTGATGACTTCTGGCCAATAAATTCTCCTCGCAGTCATGTTCATGG ACTATCTGCAACTCATCCTGGAATTGATTATGGACTTGGAAAAAATGGAGACAGAAATGAAGATGCAGATGAATGGACAAGAAAACCCTATCTTCATGAT AGGGATAGATTTGAAAGTTCTTCCATGCAAAGAATTAGCAACGGACATGAGCATCTAGACCCAAGAGCTCTGATAGATGCATATGGAGATGACAGGGTTA AAAGGAATGCGAATATTAACCATCGGCAGCATGATCGCGTGAATGTGAATGGCATGGGAAATAGTCTGGCGCCAAGATCATGGCAGAATACAGAAGAGGA TGAATTTGACTGGGAAGATATTAACCCTTCTTTAAGCAATCATAACAGGAGTGGTAAGTTCTTGTTATCATCTGGTCCTCCCATGGAAACTGTTGGAGTC ATGCCTGGCATCGGTAAAACTTCTGCTCCGTCAGGGTCTAATGTTAGGGGCAACCTCATTTTTCAAATGCAGTCACAAGGGAAGGTTGATTCCTCTAACA TGGTTGAAGAACTATACCCTACTGCTAATAAAAATCTGAGTATAGGTTCTAGGGATCCTCGAGACGTGTTGAATGTACCTCATCACTTGTCTCAATCAAC ACATCTTTTGAACGATCGAGAAAGTTTGGCTACTCATGTTGATAAATTCCCAGATACTGAAGGTCAGCTTATTCACCATTCATTTTCATCAAGAATAGAA TCTCCTGTTGATACTAATACTTATGGAACTTGGTCTGATAATCTGCCTTCTTCAATAGGGTCATGGCCTGCATTAAACATGCATAAATCCAATCTCTCTG TACAGCCAATATTTCCATCACAGAGGCAGAATAGGAATCAGTTTGACCGAATGAATCCTAGCAGCAGCGATACTAATATTGAGATGTCTGGCAGCTTGCA TGGTCAACAGTATAACAGTTTTGATGGCAGAGGGCCTGCCTTAATGAAGCAACCCTTCATGGCCTTGAATCAGCAAAATCATGGAAAATTGAACCCTTTC TTACCCCAGTTTCGGCCACCATTGGAAGTTCGAGAAAGCTTCCCTCAATCTTCAATGGCTTCGATTCCACCTCATTCCCTTACACACCCTTCAAGCCATG GGTACCCCATGCAACGCCCTGGAGGTAGCATAAACATGGGCCCCCCACCTTCACAAATAAACAATATCCTCAGTAACTTACATTCGCAGATGGGTGTAAG ACCACCTCTACCTCTAGGTCCTCGTCCTGCCTCTCAAATGATGCCTAACCCCCAAAATAGTTGCCCAGGTGGTGCTTTTTCCGGTTTGATTAATTCTCTC ATGTCCCAAGGTTTCATCTCATTGACGAATCAGGCACCTCTGCAGGGGTCTTTGGGACTCGAGTTCGACGCTGATCTTCTGAAGGTGCGGCATGAGTCTG CAATTAGTGCTCTTTATGCCGATCTCCCGAGACAGTGCAAGACATGCGGCCTTCGCTTCAAGTGCCAAGAAGAGCACAGCAGTCACATGGATTGGCATGT TACCAGGAACCGTATGTCAAAATCTCGTAAGCAGAAACCTTCCCGAAAGTGGTTTGTGAGTGCAAGTATGTGGCTCACTGGTGCCGAGGCGCTGGGGACC GATGCCGCTCCTAGTTTCGTGACTTCTGAGGTTGTCGTCGATGAGAAGAAAGACGACGAAGAATTGGCTGTTCCTGCCGATGAAGATCAGAATGAATGTG CGTTATGTGGGGAGCGTTTCGATGATTTCTTTAGTGACGAGACCGAGGAGTGGATGTATAAAGGAGCTGTGTATTTGAGTGCCCCCCACGGTTCAACAGC TGGGATGGTTCGGGCTCAGTTAGGCCCTATAGTTCATGCCAAGTGCCGGTCGGAATCTAGTGTAGCTCCCCCTGAAAATTTAAGGCAAGCTGAAGGGGGC AATATAGCAGAAGGTAGTCTGAGGAAAAGACTCCGGACTTAA
AA sequence Show only first row Show all	>Lus10007652 pacid=23140336 polypeptide=Lus10007652 locus=Lus10007652.g ID=Lus10007652.BGIv1.0 annot-version=v1.0 MSTNDHLPPQKPPPPTPIVDKFKAMLKQRAVQASRFYDENDGGGLVDDVVELYELMLSELTFNSKPIITELTIIAGDQREYGEGIADAICARIIEAPANQ KLPSLYLVDSIVKNIGEDYALYFSSRLPEVFCEAYRQVDPSLCPSMRHLFGTWSRVFPTSVLRKIEIQLRFSPEVHNQSSGLNPLRASEAPRPTHGIHVN PKYLHQLEQSTSENVGAQRLKSHGANKVLQSSNSRFPRPLSPAAERPLSSDVDDFWPINSPRSHVHGLSATHPGIDYGLGKNGDRNEDADEWTRKPYLHD RDRFESSSMQRISNGHEHLDPRALIDAYGDDRVKRNANINHRQHDRVNVNGMGNSLAPRSWQNTEEDEFDWEDINPSLSNHNRSGKFLLSSGPPMETVGV MPGIGKTSAPSGSNVRGNLIFQMQSQGKVDSSNMVEELYPTANKNLSIGSRDPRDVLNVPHHLSQSTHLLNDRESLATHVDKFPDTEGQLIHHSFSSRIE SPVDTNTYGTWSDNLPSSIGSWPALNMHKSNLSVQPIFPSQRQNRNQFDRMNPSSSDTNIEMSGSLHGQQYNSFDGRGPALMKQPFMALNQQNHGKLNPF LPQFRPPLEVRESFPQSSMASIPPHSLTHPSSHGYPMQRPGGSINMGPPPSQINNILSNLHSQMGVRPPLPLGPRPASQMMPNPQNSCPGGAFSGLINSL MSQGFISLTNQAPLQGSLGLEFDADLLKVRHESAISALYADLPRQCKTCGLRFKCQEEHSSHMDWHVTRNRMSKSRKQKPSRKWFVSASMWLTGAEALGT DAAPSFVTSEVVVDEKKDDEELAVPADEDQNECALCGERFDDFFSDETEEWMYKGAVYLSAPHGSTAGMVRAQLGPIVHAKCRSESSVAPPENLRQAEGG NIAEGSLRKRLRT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G04885		PCFS4	PCF11P-similar protein 4 (.1)		Lus10007652 [exp]	0	1
AT5G46920			Intron maturase, type II famil...		Lus10003020 [exp]	1.0	0.9340
AT1G36990			unknown protein		Lus10029655 [exp]	3.5	0.9323
AT3G23780		NRPE2, DMS2, DR...	DEFECTIVE IN MERISTEM SILENCIN...		Lus10039677 [exp]	4.0	0.9253
AT1G36990			unknown protein		Lus10042697 [exp]	5.5	0.9107
AT5G64390		HEN4	HUA ENHANCER 4, RNA-binding KH...		Lus10007236 [exp]	9.2	0.9048
AT1G20960		EMB1507	embryo defective 1507, U5 smal...		Lus10025168 [exp]	9.2	0.9289
AT1G05460		SDE3	SILENCING DEFECTIVE, P-loop co...		Lus10010577 [exp]	9.9	0.9046
AT1G08060		MOM1, MOM	MORPHEUS MOLECULE 1, MORPHEUS ...		Lus10016103 [exp]	10.0	0.9250
AT5G21030			PAZ domain-containing protein ...		Lus10025537 [exp]	10.4	0.9113
AT2G40030		NRPE1, DMS5, AT...	DEFECTIVE IN MERISTEM SILENCIN...		Lus10002748 [exp]	10.9	0.9222

Compare expression of checked genes

Lus10007652 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.