Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G19570 295 / 9e-100 DESZ, AT-CDA1, CDA1 cytidine deaminase 1 (.1) AT4G29600 226 / 2e-72 Cytidine/deoxycytidylate deaminase family protein (.1) AT4G29610 221 / 8e-71 Cytidine/deoxycytidylate deaminase family protein (.1) AT4G29620 200 / 5e-62 Cytidine/deoxycytidylate deaminase family protein (.1) AT4G29570 179 / 3e-54 Cytidine/deoxycytidylate deaminase family protein (.1) AT4G29640 165 / 3e-48 Cytidine/deoxycytidylate deaminase family protein (.1) AT4G29650 142 / 1e-40 Cytidine/deoxycytidylate deaminase family protein (.1) AT4G29630 140 / 3e-40 Cytidine/deoxycytidylate deaminase family protein (.1) AT4G29580 134 / 7e-37 Cytidine/deoxycytidylate deaminase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018355 [exp] 456 / 4e-163 AT2G19570 350 / 6e-122 cytidine deaminase 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G150600 [exp] 318 / 3e-108 AT2G19570 357 / 3e-124 cytidine deaminase 1 (.1) Potri.018G066400 [exp] 314 / 9e-107 AT2G19570 385 / 2e-135 cytidine deaminase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0109 [flax] [poplar] CDA PF08211 [flax] [poplar] dCMP_cyt_deam_2 Cytidine and deoxycytidylate deaminase zinc-binding region CL0109 [flax] [poplar] CDA PF00383 [flax] [poplar] dCMP_cyt_deam_1 Cytidine and deoxycytidylate deaminase zinc-binding region
Representative CDS sequence Show only first row Show all	>Lus10007654 pacid=23140341 polypeptide=Lus10007654 locus=Lus10007654.g ID=Lus10007654.BGIv1.0 annot-version=v1.0 ATGGAGGAGCAGGTGAGGTTCGTAATCGAAGCGGCGGAAGCGGAATCCATGGCAAAGCAATTGGGGCTGACGAAGGTGGAGGAGCTCTTGCCTACATTAG TCAGATCTGCACAATCATTGGCCCGCCCGCCGATCTCCAACTACCAAGTCGGGGCAGGCGGACTAGGAGCCCCGCCATTGACCAGATCCGCTCTATCTTG GCCCCGCCCGCCGATCTCCAACTACCAAGTCGGGGCAGTCGGACTCGGTTCCTCCGGCCGGATCTTCTTCGGGGCGAACATCGAATTCCCCGGTCTCCCA CTCAACAACTCAATCCACGCCGAGCAATTCCTCGTCATCAATCTGTACCTCAATGCTGAGCCTGCAATGTCATCCATGGCCGTCTCTTCCGCCCCTTGCG GACACTGCCGTCAGTTTTTCCAGGAACTCCGATCCTCCGGCTCGATCCGGATCCTTGTAACCGACGACGACCACCGGAGCAGGGAGTTTGAGGACTTTTC CACGTTCCTCCCGCACAGATTCGGCCCTGATGATCTGCTTCACAAGGACTCCCCGCTGATTCTCGAGCGCCACGACAACAAGCTGTCTCTGATTTCGGAT TCTGATTCGGAATCGGATTCGGAGAAGGAGCTGAAAATGGAGGCGCTTGAGGCTGCGAACCGATCCCACGCGCCGTACAGCAAGTGTCCGTCGGGGATTG CGATGATGGACAGGGAAGGGAAAGTGTACAGGGGATCGTACATGGAGTCAGCGGCGTTCAACCCGAGTTTGGGTCCGGTACAGGCGGCGATGGTGGCGTG TATAGTCGGAGGGGCTTACGAGAAGATCGTGGCGGCGATTCTTGTAGAAAAGGAAGGGGCTTTGGTAAGGCAGGAGGCGACGGCGAGGTTGATCTTGGCT ACGGTGGCGCCCAAATGTGAGCTGAAGGTTTTCCATTGCCGGTCGGGATAG
AA sequence Show only first row Show all	>Lus10007654 pacid=23140341 polypeptide=Lus10007654 locus=Lus10007654.g ID=Lus10007654.BGIv1.0 annot-version=v1.0 MEEQVRFVIEAAEAESMAKQLGLTKVEELLPTLVRSAQSLARPPISNYQVGAGGLGAPPLTRSALSWPRPPISNYQVGAVGLGSSGRIFFGANIEFPGLP LNNSIHAEQFLVINLYLNAEPAMSSMAVSSAPCGHCRQFFQELRSSGSIRILVTDDDHRSREFEDFSTFLPHRFGPDDLLHKDSPLILERHDNKLSLISD SDSESDSEKELKMEALEAANRSHAPYSKCPSGIAMMDREGKVYRGSYMESAAFNPSLGPVQAAMVACIVGGAYEKIVAAILVEKEGALVRQEATARLILA TVAPKCELKVFHCRSG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G19570		DESZ, AT-CDA1, ...	cytidine deaminase 1 (.1)		Lus10007654 [exp]	0	1
AT2G19570		DESZ, AT-CDA1, ...	cytidine deaminase 1 (.1)		Lus10018355 [exp]	1.0	0.9194
AT3G10230		AtLCY, LYC	lycopene cyclase (.1.2)		Lus10013298 [exp]	1.7	0.9018
AT1G11360			Adenine nucleotide alpha hydro...		Lus10031594 [exp]	3.5	0.8760
AT4G28270		ATRMA2	RING membrane-anchor 2 (.1)		Lus10031641 [exp]	3.7	0.9059
AT5G58375			Methyltransferase-related prot...		Lus10042227 [exp]	3.9	0.8837
AT1G07890		ATAPX01, CS1, A...	maternal effect embryo arrest ...		Lus10015970 [exp]	4.9	0.8668
AT1G23390			Kelch repeat-containing F-box ...		Lus10029127 [exp]	4.9	0.8939
AT3G12630		SAP5	stress associated protein 5, A...		Lus10037702 [exp]	7.7	0.8515
AT4G21350		PUB8, B80	plant U-box 8 (.1)		Lus10006747 [exp]	7.9	0.8581
AT1G08830		CSD1	copper/zinc superoxide dismuta...		Lus10001719 [exp]	8.8	0.8488

Compare expression of checked genes

Lus10007654 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.