Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G61820 618 / 0 BGLU46 beta glucosidase 46 (.1.3) AT4G21760 611 / 0 BGLU47 beta-glucosidase 47 (.1) AT1G61810 610 / 0 BGLU45 beta-glucosidase 45 (.1.2.3) AT1G26560 452 / 6e-155 BGLU40 beta glucosidase 40 (.1) AT5G36890 435 / 1e-148 BGLU42 beta glucosidase 42 (.1.2) AT3G18070 429 / 3e-146 BGLU43 beta glucosidase 43 (.1.2) AT2G44480 429 / 5e-146 BGLU17 beta glucosidase 17 (.1.2) AT3G18080 428 / 2e-145 BGLU44 B-S glucosidase 44 (.1) AT5G54570 427 / 6e-145 BGLU41 beta glucosidase 41 (.1) AT2G44450 421 / 1e-142 BGLU15 beta glucosidase 15 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018354 [exp] 716 / 0 AT4G21760 462 / 1e-159 beta-glucosidase 47 (.1) Lus10007656 [exp] 654 / 0 AT1G61820 637 / 0.0 beta glucosidase 46 (.1.3) Lus10018353 [exp] 653 / 0 AT1G61820 629 / 0.0 beta glucosidase 46 (.1.3) Lus10032660 [exp] 542 / 0 AT4G21760 525 / 6e-175 beta-glucosidase 47 (.1) Lus10031235 [exp] 460 / 6e-158 AT2G44450 590 / 0.0 beta glucosidase 15 (.1) Lus10037098 [exp] 456 / 2e-156 AT1G26560 785 / 0.0 beta glucosidase 40 (.1) Lus10036885 [exp] 454 / 2e-155 AT1G26560 778 / 0.0 beta glucosidase 40 (.1) Lus10031251 [exp] 450 / 5e-154 AT2G44450 572 / 0.0 beta glucosidase 15 (.1) Lus10009644 [exp] 443 / 4e-151 AT3G18080 812 / 0.0 B-S glucosidase 44 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G019800 [exp] 742 / 0 AT4G21760 658 / 0.0 beta-glucosidase 47 (.1) Potri.004G019700 [exp] 672 / 0 AT1G61820 655 / 0.0 beta glucosidase 46 (.1.3) Potri.004G019500 [exp] 671 / 0 AT1G61820 657 / 0.0 beta glucosidase 46 (.1.3) Potri.004G019366 [exp] 665 / 0 AT1G61820 608 / 0.0 beta glucosidase 46 (.1.3) Potri.004G019300 [exp] 662 / 0 AT1G61820 636 / 0.0 beta glucosidase 46 (.1.3) Potri.001G403900 [exp] 531 / 0 AT4G21760 516 / 7e-180 beta-glucosidase 47 (.1) Potri.001G409900 [exp] 461 / 2e-158 AT5G54570 791 / 0.0 beta glucosidase 41 (.1) Potri.001G015100 [exp] 454 / 2e-155 AT5G44640 553 / 0.0 beta glucosidase 13 (.1) Potri.015G041300 [exp] 442 / 5e-151 AT3G18080 839 / 0.0 B-S glucosidase 44 (.1) Potri.008G094200 [exp] 441 / 2e-150 AT1G26560 798 / 0.0 beta glucosidase 40 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0058 [flax] [poplar] Glyco_hydro_tim PF00232 [flax] [poplar] Glyco_hydro_1 Glycosyl hydrolase family 1
Representative CDS sequence Show only first row Show all	>Lus10007655 pacid=23140309 polypeptide=Lus10007655 locus=Lus10007655.g ID=Lus10007655.BGIv1.0 annot-version=v1.0 ATGGAGGTTTGGTTTACTGTTGTAGTACTTACAACACTACTGATGGTTCTGCTGGCAAGGAGTTCTTCTGGTAATCCTGATGCCGTGCGGGGTGGTACTA ATCCGTTTCCTGGTAACTTTCTGCTTGGAACTGCCTCTTCTTCTTACCAGTTCGAAGGAGCTTACTTGTCTGATGGTAAAGGCCTCAACAACTGGGACGT TTTCACTCATGCATCTGGAAACATTGCAGATGGAAGTACAGGAGACGTTGCTGTTGATCACTATAACAGATACCTGGAGGATTTGGATCTGATGAGTGAG CTTGGTGTGAATAGCTACCGTTTCTCGATATCATGGGCAAGAGTCTTACCAAAGGGAAGATTCGGAGAGGTGAACCGAGAAGGGATCGACCATTATAACC TCCTCATCGATGAACTTTTACATAGAGGAATCCAACCTTTTGTCACATTGACTCACTATGACATCCCTCAGGAGCTTGAGGAAAGATACAGTGGTTGGCT CAGCCCCAACATACAGGAGGACTTCAAACACTATGCAGGAGTATGCTTCAGGTCATTTGGAGACAGGGTGAAGCATTGGGCGACATTCAATGAGCCGAAT GTTGCAGCCATCAGGAGTTACAGATCAGGGGTTTTCCCACCGGCTCGATGTTCAGGAGAATTTGGCAATTGTACCGATGGGGATTCGGAGATTGAGCCTT TCGTAGCAGCTCATAACATGATCCTGTCACATGCTGCTGCTGTCAGCCTCTACCGGACCAAGTACCAGAAAGAACAAGGTGGCATCATTGGACTTGTTGT GAATGCTTTATGGTACGAGCCCTTCACCGATTCCTTGGAAGACAAGTTAGCTGTTGATCGAGCCTTGGATTTCTACATGAACTGGTTCCTTGACCCGGTC ATACTCGGAAGATATCCTGTCGGAATGTGCAAGATTCTAGGATCGAAGCTGCCTAATTTCTCGAGCCGTGAATCGAGGATGCTCATAAGGAGTGGCCTAG ATTTCATTGGCTTGAACCATTACACCAGCTTCTACATTAAAGACTGTATCTTTTCCAAGTGTGAACAAGGTCCGGGTGCTACAAAGACAGAAGGATTTTA TCTGAGGCTTGACCAGAAGAATGGCTCTTACATTGGTGAACCTACTCCGGTGGATTGGTTGTTCGTTTATCCTCAAGGAATGGAGAACATGGTCACGTAT GTTAAAGAACGGTACAATAACATACCAATGTACATTACAGAAAATGGGTATGGCCAAAGAGAAGGGAGAGAGACATCTGCTAAGGATTTGCTTAATGACA TTAGAAGAGTTGAGTACATGAGGCGCTACTTGGATGCCTTGGCAGCCGCGGTCAGGAAAGGAGCAGATGTTAGAGGGTATTTTGTGTGGTCGTTGCTAGA CAACTTTGAGTGGACTGCTGGGTACACAAGGGGGTTTGGGTTGTACCAAGTTGATTTCCATAGCTTGGAGAGAATCCCTAGGGTTTCAGCAACTTGGTAT AAGATCTACATTGATGAATTTAAGGCTGCCTTCAGCAGCATCAGGTTCTCCCGTGAGGAGGGCTATCATTTTGGTGCTTTCGATGAGGGTTTGACACATT GA
AA sequence Show only first row Show all	>Lus10007655 pacid=23140309 polypeptide=Lus10007655 locus=Lus10007655.g ID=Lus10007655.BGIv1.0 annot-version=v1.0 MEVWFTVVVLTTLLMVLLARSSSGNPDAVRGGTNPFPGNFLLGTASSSYQFEGAYLSDGKGLNNWDVFTHASGNIADGSTGDVAVDHYNRYLEDLDLMSE LGVNSYRFSISWARVLPKGRFGEVNREGIDHYNLLIDELLHRGIQPFVTLTHYDIPQELEERYSGWLSPNIQEDFKHYAGVCFRSFGDRVKHWATFNEPN VAAIRSYRSGVFPPARCSGEFGNCTDGDSEIEPFVAAHNMILSHAAAVSLYRTKYQKEQGGIIGLVVNALWYEPFTDSLEDKLAVDRALDFYMNWFLDPV ILGRYPVGMCKILGSKLPNFSSRESRMLIRSGLDFIGLNHYTSFYIKDCIFSKCEQGPGATKTEGFYLRLDQKNGSYIGEPTPVDWLFVYPQGMENMVTY VKERYNNIPMYITENGYGQREGRETSAKDLLNDIRRVEYMRRYLDALAAAVRKGADVRGYFVWSLLDNFEWTAGYTRGFGLYQVDFHSLERIPRVSATWY KIYIDEFKAAFSSIRFSREEGYHFGAFDEGLTH

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G61820		BGLU46	beta glucosidase 46 (.1.3)		Lus10007655 [exp]	0	1
AT1G79420			Protein of unknown function (D...		Lus10001755 [exp]	1.7	0.9249
AT3G12920		BRG3	BOI-related gene 3, SBP (S-rib...		Lus10031780 [exp]	2.0	0.9206
AT5G17850			Sodium/calcium exchanger famil...		Lus10013634 [exp]	2.8	0.9043
AT3G25130			unknown protein		Lus10025905 [exp]	3.3	0.8819
AT1G14630			unknown protein		Lus10039139 [exp]	3.9	0.8948
AT4G22730			Leucine-rich repeat protein ki...		Lus10004333 [exp]	4.9	0.8937
AT4G22730			Leucine-rich repeat protein ki...		Lus10028916 [exp]	7.3	0.8846
AT1G49230			RING/U-box superfamily protein...		Lus10005817 [exp]	7.9	0.8611
AT2G43060	bHLH	AtIBH1, bHLH158	ILI1 binding bHLH 1 (.1)		Lus10025511 [exp]	8.9	0.8847
AT1G22610			C2 calcium/lipid-binding plant...		Lus10009459 [exp]	9.2	0.9063

Compare expression of checked genes

Lus10007655 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.