Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G61820 637 / 0 BGLU46 beta glucosidase 46 (.1.3) AT1G61810 621 / 0 BGLU45 beta-glucosidase 45 (.1.2.3) AT4G21760 611 / 0 BGLU47 beta-glucosidase 47 (.1) AT3G18080 467 / 4e-161 BGLU44 B-S glucosidase 44 (.1) AT3G18070 460 / 1e-158 BGLU43 beta glucosidase 43 (.1.2) AT1G26560 460 / 2e-158 BGLU40 beta glucosidase 40 (.1) AT5G54570 446 / 2e-152 BGLU41 beta glucosidase 41 (.1) AT2G44480 445 / 2e-152 BGLU17 beta glucosidase 17 (.1.2) AT2G44450 444 / 5e-152 BGLU15 beta glucosidase 15 (.1) AT5G44640 437 / 2e-149 BGLU13 beta glucosidase 13 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018353 [exp] 1020 / 0 AT1G61820 629 / 0.0 beta glucosidase 46 (.1.3) Lus10007655 [exp] 654 / 0 AT1G61820 620 / 0.0 beta glucosidase 46 (.1.3) Lus10032660 [exp] 557 / 0 AT4G21760 525 / 6e-175 beta-glucosidase 47 (.1) Lus10031251 [exp] 486 / 2e-168 AT2G44450 572 / 0.0 beta glucosidase 15 (.1) Lus10031234 [exp] 482 / 5e-167 AT2G44480 563 / 0.0 beta glucosidase 17 (.1.2) Lus10031808 [exp] 480 / 3e-166 AT2G44480 560 / 0.0 beta glucosidase 17 (.1.2) Lus10018354 [exp] 479 / 3e-166 AT4G21760 462 / 1e-159 beta-glucosidase 47 (.1) Lus10031235 [exp] 477 / 9e-165 AT2G44450 590 / 0.0 beta glucosidase 15 (.1) Lus10004654 [exp] 470 / 2e-162 AT1G26560 773 / 0.0 beta glucosidase 40 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G019500 [exp] 740 / 0 AT1G61820 657 / 0.0 beta glucosidase 46 (.1.3) Potri.004G019700 [exp] 733 / 0 AT1G61820 655 / 0.0 beta glucosidase 46 (.1.3) Potri.004G019300 [exp] 722 / 0 AT1G61820 636 / 0.0 beta glucosidase 46 (.1.3) Potri.004G019366 [exp] 719 / 0 AT1G61820 608 / 0.0 beta glucosidase 46 (.1.3) Potri.004G019800 [exp] 704 / 0 AT4G21760 658 / 0.0 beta-glucosidase 47 (.1) Potri.001G403900 [exp] 548 / 0 AT4G21760 516 / 7e-180 beta-glucosidase 47 (.1) Potri.012G049300 [exp] 472 / 5e-163 AT3G18080 831 / 0.0 B-S glucosidase 44 (.1) Potri.015G041300 [exp] 471 / 7e-163 AT3G18080 839 / 0.0 B-S glucosidase 44 (.1) Potri.004G040700 [exp] 471 / 1e-162 AT5G44640 548 / 0.0 beta glucosidase 13 (.1) Potri.001G015100 [exp] 468 / 1e-161 AT5G44640 553 / 0.0 beta glucosidase 13 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0058 [flax] [poplar] Glyco_hydro_tim PF00232 [flax] [poplar] Glyco_hydro_1 Glycosyl hydrolase family 1
Representative CDS sequence Show only first row Show all	>Lus10007656 pacid=23140314 polypeptide=Lus10007656 locus=Lus10007656.g ID=Lus10007656.BGIv1.0 annot-version=v1.0 ATGAGACTCCTCCTCCTACCCTTCTTAGTGGCCGCCGCCTCGTTCGCCATGAAAAGCAGCGCAGACGATAATTCTCCTTTTGGCGACAACTTTCTGTTCG GGACTGCGGCTTCATCTTATCAGTTTGAAGGCGCTTATCTTAGCGACGGCAAAGGACTCAGCAACTGGGACGTTCACAGCCATACCCCAGGCAAGATCGT CGATGGAAGCAACGGTGATGTCGCCGTCGATAGCTACCACCGGTACCAGGAAGACATAAGCTTAATGAAATCCCTCGGAGTCAACAGCTACCGTTTCTCC ATTTCTTGGTCACGAATTCTACCTAAGGGGAGATTCGGACAGATTAACAAAGTTGGAATTGCATACTACAACGAGCTCATCGACGCACTCTTGGCCAAAG GAGTCAAACCATTTATAACACTATGCCATTTCGACATCCCACAAGAGCTCGAGGATCGTTATGGTAGCTGGCTTAGCCCGCTGATCCAGGAGGATTTCGG ACATTACGCTGATGTGTGTTTCAAGTACTTCGGAGACAGAGTGAAGTACTGGTCAACTTTCAACGAGCCCAACTTCCAGGTTGCGTTCGGTTACAGGCAG GGTACTTTCCCGCCGTCGCGTTGCTCAGGGGACTTCGGGAACTGTACCGCCGGCAACTCCGAAAGAGAGCCGTTTATTGCGGCGCACAATGTGATCCTGT CGCATGCGGCAGCGGTGGAGGTTTACAGGACAAAGTACCAGGCTGAGCAGAAGGGCATGATCGGAATTGTCTTGCATTGTGCTTGGTTTGAGCCTTTGAG TGATTCTGAAGCTGATAGGTTGGCGACTTTGAGGGCTAATGCTTTCTTCATGAACTGGTTCTTTGACCCGATTCTATTCGGTCGGTACCCAGAAGAGATG AAACAGGTTCTCGGGTCGACCCTGCCCGAGTTTTCGGGCGAGGAGGTTGAGAGGTTGAAAGGAGGGTTGGATTTCTTGGGGATTAATCATTACACGAGCT ATTACGTTAAGGATTGTATGTACTCGGAGTGTGAAGCTGGACTTGGAACTTCAAGGACTGAAGGTTACTTCCAGCAGCTTCATGAAAGAGACGGGATTCC CATGGGCAAACCGGGTGATTTGGACTGGCAGTACGTTTATCCACAGGGGATGGAGAAGATGGTGACATACTTGAAAGACAGATACAACAATGTACCGATG ATCATCTCCGAAAACGGGTACGGTGAGGTGAACAATCCAATGCTGACGACTGGAGATTTCCTGAAGGACGTAAGGAGAGTGGAGTACATGGCGACGTATT TGGAAGGGCTAATGGCTGCAATGAGGAAAGGTGCGGATGTTAGAGGCTACTATGCTTGGTCATTGCTCGACAATTTTGAGTGGACCAATGGTTACACGCA ACGATTCGGGATCTGCCATGTCGATTACAAGACGCTGGAGAGAACCCCGAAGCTATCAGCAGTATGGCTCAGCAAATTCATTGCTAAGTACAGCAAGACA CCCATAGCCCAGATGTGA
AA sequence Show only first row Show all	>Lus10007656 pacid=23140314 polypeptide=Lus10007656 locus=Lus10007656.g ID=Lus10007656.BGIv1.0 annot-version=v1.0 MRLLLLPFLVAAASFAMKSSADDNSPFGDNFLFGTAASSYQFEGAYLSDGKGLSNWDVHSHTPGKIVDGSNGDVAVDSYHRYQEDISLMKSLGVNSYRFS ISWSRILPKGRFGQINKVGIAYYNELIDALLAKGVKPFITLCHFDIPQELEDRYGSWLSPLIQEDFGHYADVCFKYFGDRVKYWSTFNEPNFQVAFGYRQ GTFPPSRCSGDFGNCTAGNSEREPFIAAHNVILSHAAAVEVYRTKYQAEQKGMIGIVLHCAWFEPLSDSEADRLATLRANAFFMNWFFDPILFGRYPEEM KQVLGSTLPEFSGEEVERLKGGLDFLGINHYTSYYVKDCMYSECEAGLGTSRTEGYFQQLHERDGIPMGKPGDLDWQYVYPQGMEKMVTYLKDRYNNVPM IISENGYGEVNNPMLTTGDFLKDVRRVEYMATYLEGLMAAMRKGADVRGYYAWSLLDNFEWTNGYTQRFGICHVDYKTLERTPKLSAVWLSKFIAKYSKT PIAQM

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G61820		BGLU46	beta glucosidase 46 (.1.3)		Lus10007656 [exp]	0	1
AT4G19860			alpha/beta-Hydrolases superfam...		Lus10017142 [exp]	2.4	0.9197
AT1G67310	CAMTA		Calmodulin-binding transcripti...		Lus10003119 [exp]	3.0	0.9045
AT1G31930		XLG3	extra-large GTP-binding protei...		Lus10012124 [exp]	4.2	0.8748
AT1G52320			unknown protein		Lus10035887 [exp]	5.7	0.8708
AT1G22930			T-complex protein 11 (.1.2)		Lus10015468 [exp]	5.7	0.8890
AT5G05140			Transcription elongation facto...		Lus10027295 [exp]	6.0	0.9110
AT1G11020			RING/FYVE/PHD zinc finger supe...		Lus10017764 [exp]	9.9	0.8737
AT4G32480			Protein of unknown function (D...		Lus10017723 [exp]	10.6	0.8599
AT2G23320	WRKY	WRKY15	WRKY DNA-binding protein 15 (....		Lus10006261 [exp]	10.6	0.8520
AT5G01760			ENTH/VHS/GAT family protein (....		Lus10014155 [exp]	13.8	0.8440

Compare expression of checked genes

Lus10007656 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.