Plant FIBer expression Database

Lus10007657 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G21770 634 / 0 Pseudouridine synthase family protein (.1)
AT3G19440 51 / 1e-06 Pseudouridine synthase family protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10018352
[exp]
553 / 0 AT4G21770 446 / 5e-156 Pseudouridine synthase family protein (.1)
Lus10022437
[exp]
53 / 4e-07 AT5G51140 505 / 1e-177 Pseudouridine synthase family protein (.1.2)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.004G019100
[exp]
686 / 0 AT4G21770 656 / 0.0 Pseudouridine synthase family protein (.1)
Potri.015G101300
[exp]
57 / 2e-08 AT5G51140 512 / 0.0 Pseudouridine synthase family protein (.1.2)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0649 PseudoU_synth PF00849 PseudoU_synth_2 RNA pseudouridylate synthase
Representative CDS sequence
>Lus10007657 pacid=23140318 polypeptide=Lus10007657 locus=Lus10007657.g ID=Lus10007657.BGIv1.0 annot-version=v1.0
ATGGCTTCACTGTACCTAGCTTCAATATTCGTAACCACTCACCGGAGCTTCAGTGCGCCCTCAGCACTCCGGCGGACTCTAGCTTTGAGTCGCTCTACTC
CTTTCGCTAAGCACCGCAGCAAACTTGCTCCAGTTTGCCGGCACCCAAGCTCAAACCACAGGAGTTTCAGCTGCGATTCTGTCAAAGCGGACGTTTCTCA
GCCAACCACCGTTCCCGATTTCACCTGTAGTTATCCAGAATACAGCAGGCTGCTACCATGTCCTGATTACAATTACCCACCAAGAGTTGAACACCTTGTG
GTTTCAGAGAAGTCGACCGTTCTGGAATATGTGTCCAAGGCACTAGATCTTCCTCCTCTGTTTGTTACAGATCTGATTGAGTTTGGAGCTGTGCATTGTG
CCCTTGTATGTCCAAAGCCACCTCCTACAGCCACCCCGGAGGAGATGAGGGTGTATGAAGAAGTCACTGCACCATCTGTTCTGAAGGAAAGAGCTTCAAT
CAAAGGGAAGACGGTACGAGAAGCACAAAAGACTTTCAGGGTAACTCATGGCAGCAAGTATGTCGAAGCTGGGATGTATTTACGTGTTCATGTGCATCCC
AAACGCTCCCCAAGGTGCTATGAAATTGATTGGAAATCAAGGATTATAGCTGTAGCTGATTCATATGTTGTTTTGGACAAACCCGCTGGCACATCGGTAG
GAGGAACCACAGACAACATTGTCGAAAGCTGTACAACCTTTACTACTCGGGCATTAGGTTTCACTGAACCATTGAAGACGACTCATCAGATTGATAATTG
CACAGAAGGCTGTGTGGTGTTAGCTAGGACGAAGGAATACTGCTCAGTATTTCATCAGAAAATCAGAGAGAAACAGGTGCAAAAACTTTACCTAGCTCTT
GCTGCATCAGCACTGCCAACTGGTGTAATTACACACTACATGCGTCCCATGAATAGGGCTCCACGACTTGTTTCAGAAGATTTTACAGAAGGTTGGCTGT
TGTGTCAACTGGAGATTATGGAATGCAAGGAAGTTCCATGGCCAAGCACTGCGATCGAAGCAAAGCACCGGGTCGTAGACTGTGGTTGGCCGTCGAGAGA
TAAAGCCTATGAATGCAGGATTAACCTCTTAACTGGTCGCACCCATCAGATTCGAGCTCAGCTGGCAGCTTGTGGGGCCCCATTGGTTGGTGACACAATG
TACATGCCAGCTGCAGTTGCAGAAATGGCGAGTCCCGGGGTCAATCCATTTGGAAAACGCGGACGACAAGCAGATGACGATAACGCTGTGTCAGAGTGGG
TTGCACTACACGGCAGCGAACCGAGTGCTGCCATCGGCCTGCAGGCATGTCAAATCTCGTGGGACGAAGACAGATACTGCTACGAGGCTGGATCTCCCTG
GTGGAGATGA
AA sequence
>Lus10007657 pacid=23140318 polypeptide=Lus10007657 locus=Lus10007657.g ID=Lus10007657.BGIv1.0 annot-version=v1.0
MASLYLASIFVTTHRSFSAPSALRRTLALSRSTPFAKHRSKLAPVCRHPSSNHRSFSCDSVKADVSQPTTVPDFTCSYPEYSRLLPCPDYNYPPRVEHLV
VSEKSTVLEYVSKALDLPPLFVTDLIEFGAVHCALVCPKPPPTATPEEMRVYEEVTAPSVLKERASIKGKTVREAQKTFRVTHGSKYVEAGMYLRVHVHP
KRSPRCYEIDWKSRIIAVADSYVVLDKPAGTSVGGTTDNIVESCTTFTTRALGFTEPLKTTHQIDNCTEGCVVLARTKEYCSVFHQKIREKQVQKLYLAL
AASALPTGVITHYMRPMNRAPRLVSEDFTEGWLLCQLEIMECKEVPWPSTAIEAKHRVVDCGWPSRDKAYECRINLLTGRTHQIRAQLAACGAPLVGDTM
YMPAAVAEMASPGVNPFGKRGRQADDDNAVSEWVALHGSEPSAAIGLQACQISWDEDRYCYEAGSPWWR

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT4G21770 Pseudouridine synthase family ... Lus10007657
[exp]
0 1
AT2G04270 RNEE/G RNAse E/G-like (.1.2.3.4.5) Lus10041094
[exp]
2.2 0.9536
AT2G05990 ENR1, MOD1 MOSAIC DEATH 1, ENOYL-ACP REDU... Lus10012019
[exp]
3.2 0.9451
AT5G22640 EMB1211 embryo defective 1211, MORN (M... Lus10020545
[exp]
3.5 0.9490
AT5G22640 EMB1211 embryo defective 1211, MORN (M... Lus10009392
[exp]
3.9 0.9471
AT4G29750 CRS1 / YhbY (CRM) domain-conta... Lus10027610
[exp]
4.0 0.9392
AT4G26370 antitermination NusB domain-co... Lus10013400
[exp]
4.0 0.9465
AT4G39620 ATPPR5, EMB2453 EMBRYO DEFECTIVE 2453, A. THAL... Lus10036632
[exp]
6.0 0.9428
AT3G18110 EMB1270 embryo defective 1270, Pentatr... Lus10039148
[exp]
6.2 0.9141
AT2G04530 CPZ, TRZ2 TRNASE Z 2, Metallo-hydrolase/... Lus10014623
[exp]
6.3 0.9320
AT5G53860 EMB64, EMB2737 EMBRYO DEFECTIVE 64, embryo de... Lus10009197
[exp]
6.5 0.9409

Lus10007657 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.